Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00880 ATGGGTTATCTGAGCAGAGCTTCCAAAACCCTAAGGCAATCGAATTACTTATCGTTGTTATGCAGTTTCAATCTCAATTTCAACCCATTAACCAACAGAATAACCCATGAACGCTTTTCTGTGAGGCGTGAACTGTTCTGTTCACAGTCACGCCAATACAGCACCACCACGAGAGAGAAAAGCACCATAGATTTGAGCCAATACCCTCCGGAGCTCGTTAGAAACTTCTCAATCATTGCGCATGTAGATCATGGCAAGTCCACCCTCGCTGATCGACTTCTAGAACTCACTGGAACCATTAAGAAAGGCCATGGCCAGCCCCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATCACAGTTAAAGCCCAGACAGCAACGATGTTCTATAAGCACAGTGTAAATGGTGATGATTTCAGTGATGGAAAGGAGTCACCTAATTTTTTGCTGAATCTTATTGATACTCCTGGACATGTTGATTTTAGTTATGAAGTGTCAAGATCATTGGCAGCTTGTCAAGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTCCAAGCTCAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTAACAATTGTGCCGGTTATAAACAAGATTGATCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAATTAAAATCAATGTTTGATCTTGATCCAAATGATGCACTGCTAACATCTGCTAAAACTGGAGAGGGTCTTGAGCAAATCCTTCCGGCAGTTATACAGCGTATACCTGCACCTCCTGGTAGGAGGGAATCTCCTCTTCGCATGCTTTTACTTGATTCATATTATGATGAATACAAAGGGGTAATTTGTCATGTTGCTGTTGTTGATGGTGTCCTGAGCAAGGGGGATAAGATTTCCTCTGCAGCTACTGGTCAGTCGTATGAAGCTTTAGATGTTGGCATCATGCATCCTGAACTTACACCTACTGGTATCTTACTTACCGGACAAGTTGGTTATGTTGTAAGTGGCATGCGAACAACTAAAGAGGCCCGTGTTGGTGATACAATTTACCATACTCGGACTTCTGTAGTAGAGCCTCTTCCAGGGTTCAAGCCAGCAAAACATATGGTGTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCACGCAATAGAGAGGTTGACATGCAATGATGCCAGTGTCTCTGTTACTAAAGAAACTAGTACTGCTCTAGGTCTGGGGTTCAGGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAAAGACTTGAACAGGAATACGGAGCTCATGTTATCTCAACTATTCCTACTGTGCCTTACACATTTGAGTTTTCTGACGGAAGCAAGTTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAAAAAGTGACAGCCTGTTGGGAACCTACAGTTATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGGGGTCAGCAGTTGGAGTATTCATTCATTGACAGTCAACGGGTATTCATGAAGTACCGCCTGCCTTTGAGAGAAATTGTTGTTGACTTTTATAATGAGTTGAAGAGTATAACATCAGGCTATGCTTCATTTGATTACGAGGACTCAGATTATCAACAAGCTGATCTGGTAAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATAGTTCATAACACGAAAGCATACCGCGTTGGGCGTGAACTGACAGAGAAATTGAAAACTGTCATAGACAGGCAAATGTTCGAGATAACCATACAAGCTGCCATTGGGTCAAAAATCATAGCAAGGGAGACGATTTCTGCAATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGAAAAAGGAAGCTATTGGAGAAGCAAAAAGAAGGAAAAAAGAGAATGAAGCGTGTTGGTTCTGTTGATATACCACAAGAGGCATTTCACCAACTACTGAAAGTTTCTTAG 2034 0.4223 MGYLSRASKTLRQSNYLSLLCSFNLNFNPLTNRITHERFSVRRELFCSQSRQYSTTTREKSTIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDDFSDGKESPNFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPNDALLTSAKTGEGLEQILPAVIQRIPAPPGRRESPLRMLLLDSYYDEYKGVICHVAVVDGVLSKGDKISSAATGQSYEALDVGIMHPELTPTGILLTGQVGYVVSGMRTTKEARVGDTIYHTRTSVVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSVTKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTIPTVPYTFEFSDGSKLEVQNPASLPSNPKQKVTACWEPTVIATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQQADLVKLDILLNGQPVDAMATIVHNTKAYRVGRELTEKLKTVIDRQMFEITIQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLKVS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00880 677 CDD lepA_C 482 561 IPR035654 -
Viun5g00880 677 CDD EF4_II 270 355 - -
Viun5g00880 677 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Viun5g00880 677 PANTHER TRANSLATION FACTOR GUF1-RELATED 50 676 IPR006297 GO:0005525
Viun5g00880 677 FunFam Translation factor GUF1, mitochondrial 365 446 - -
Viun5g00880 677 NCBIfam small GTP-binding protein domain 77 251 IPR005225 GO:0005525
Viun5g00880 677 Gene3D - 561 635 IPR038363 -
Viun5g00880 677 FunFam Translation factor GUF1, mitochondrial 561 635 - -
Viun5g00880 677 FunFam Translation factor GUF1, mitochondrial 265 363 - -
Viun5g00880 677 SUPERFAMILY Translation proteins 244 367 IPR009000 -
Viun5g00880 677 Gene3D - 447 560 - -
Viun5g00880 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 284 IPR027417 -
Viun5g00880 677 CDD LepA 74 262 - -
Viun5g00880 677 Gene3D Elongation Factor G (Translational Gtpase), domain 3 365 446 - -
Viun5g00880 677 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 Gene3D Translation factors 266 364 - -
Viun5g00880 677 NCBIfam translation elongation factor 4 73 676 IPR006297 GO:0005525
Viun5g00880 677 Hamap Elongation factor 4 [lepA]. 69 677 IPR006297 GO:0005525
Viun5g00880 677 Gene3D - 71 264 IPR027417 -
Viun5g00880 677 CDD EF4_III 372 447 - -
Viun5g00880 677 SUPERFAMILY EF-G C-terminal domain-like 481 575 IPR035647 -
Viun5g00880 677 FunFam Elongation factor 4 70 264 - -
Viun5g00880 677 FunFam Translation factor GUF1, mitochondrial 447 559 - -
Viun5g00880 677 Pfam GTP-binding protein LepA C-terminus 569 675 IPR013842 -
Viun5g00880 677 SUPERFAMILY EF-G C-terminal domain-like 373 450 IPR035647 -
Viun5g00880 677 Pfam Elongation factor Tu GTP binding domain 73 260 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 263 IPR000795 GO:0003924|GO:0005525
Viun5g00880 677 Pfam Elongation factor G C-terminus 482 567 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00880 Viun-Chr5 5525788 5530976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00880 73 214 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 4.00e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00880 K21594 - gmx:100781092 1237.63