Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00872 ATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGAGACTGTATGTAAGAATAGGTTATGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCGCTGTGGAACTTGTTTACAGCAAACACTTAAGTGCTCTAGAGAGATGTTTGAAGAATGTTGCTGGTGGCAAGTTTTCTGAATATGGTTTAGAGGGTGATAGAGTGAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGAGAATTCTGGTGAGGAGGTAGAAGATGAACTTGAGAGGAGGGAGTGTGGCCGTCCGGATGGGAGGAAGTTCAGTGGTGGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAAAACGAGAATGCATATGAGTATATAAATGGGAGTAAATCATGTGGTAGTAATAGTGTGAAAGACAAAAATTCAGATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACAAATAGGGTGAACGGGGTGAATCCAGAGTTCAATGAGGCCAAGAAAGTGAGAAGGCCGGGACTTGTTGATTTGGACATGCTGGAGGACCACAACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAATGGATACACCAGAAGAGTTTGATGAGGGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGATATGGTTAGATTGTCAGATGGAAGAAAGAGCAACAATAAAAATGATGATGACGATAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAAACAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCTCTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAAAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAATGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTATGATGATCGCGTTGGGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGATGAGAGGTCTTTATTCGGAAAATCTACATCTAATGGAGTCTCCTCTTCATCTAAAACAAAACGTGGAGATTTGAAGAGAACCCTTAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACATGACTCTTGTAGTCTTGATAAATATGCACGAGTGCACATCCCTGTGGGACCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTACAAAATCTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGGAAAGGAAGACAGGATTCATGTGGCTGCCCAGTACAAGGCTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGATATGGTAGGGGAAGAAGTTAGGAGTTCTTGGACAGATGAAGATGAGAAAAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAGTGTTTTTGGGATCATCTTTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCTCGCAACCTCACCTTGTTATCACCAAAAAAATCCACAGGCAAAAGGGCAAATAGCAAGTGA 1938 0.4107 MGNGEPLDLYKLFMVVKKKGGYETVCKNRLWDLVGEEYGLGVKVGSAVELVYSKHLSALERCLKNVAGGKFSEYGLEGDRVKFQKHLMEAHTESMLENSGEEVEDELERRECGRPDGRKFSGGNRVKCVKPESNGAENENAYEYINGSKSCGSNSVKDKNSDSNGNEYDNVCDYLEGRKLCGTNRVNGVNPEFNEAKKVRRPGLVDLDMLEDHNKGEPIVVKFCGFNTEMDTPEEFDEGKLLTVDASDAESDMVRLSDGRKSNNKNDDDDSDEVLILDPSSVDKNKFGHKRKRESVSEMLIWINSIAKNPCDPALGSIPEKSKWKSCSSQEIWKQALLFRKAVFLKKDFETANEQLSWQSQKMHPSMYDDRVGALYNFRKRLKCDERSLFGKSTSNGVSSSSKTKRGDLKRTLSSRSEDVVDKKLHDSCSLDKYARVHIPVGPNHQAEVPEWTGMTCESDSKWLGTQIWPTKSVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVRSSWTDEDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRANSK 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00872 645 CDD ARID 3 60 - -
Viun5g00872 645 MobiDBLite consensus disorder prediction 598 645 - -
Viun5g00872 645 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 638 - -
Viun5g00872 645 Gene3D - 1 70 IPR036431 GO:0003677
Viun5g00872 645 SMART bright_3 1 65 IPR001606 GO:0003677
Viun5g00872 645 MobiDBLite consensus disorder prediction 599 615 - -
Viun5g00872 645 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
Viun5g00872 645 MobiDBLite consensus disorder prediction 393 415 - -
Viun5g00872 645 SMART ELM2_2 439 491 IPR000949 -
Viun5g00872 645 SUPERFAMILY ARID-like 3 72 IPR036431 GO:0003677
Viun5g00872 645 ProSiteProfiles ELM2 domain profile. 437 561 IPR000949 -
Viun5g00872 645 Pfam ARID/BRIGHT DNA binding domain 3 60 IPR001606 GO:0003677
Viun5g00872 645 MobiDBLite consensus disorder prediction 253 270 - -
Viun5g00872 645 MobiDBLite consensus disorder prediction 623 645 - -
Viun5g00872 645 MobiDBLite consensus disorder prediction 253 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00872 Viun-Chr5 5452592 5457065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00872 4 65 ARID Transcription Factor Family AT1G20910 38.462 9.05e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun5g00872 ARID 7.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00872 - - vun:114182925 1302.73