Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00871 ATGGTTTATCTGATAAGGGTGCATGCTGTTTTGATCAATTCCTTGGTGGGTTGTTTCGGAAACAGATCCGTGTCTACAATAATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGAGACTGTATGTAAGAATAGGTTATGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCGCTGTGGAACTTGTTTACAGCAAACACTTAAGTGCTCTAGAGAGATGTTTGAAGAATGTTGCTGGTGGCAAGTTTTCTGAATATGGTTTAGAGGGTGATAGAGTGAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGAGAATTCTGGTGAGGAGGTAGAAGATGAACTTGAGAGGAGGGAGTGTGGCCGTCCGGATGGGAGGAAGTTCAGTGGTGGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAAAACGAGAATGCATATGAGTATATAAATGGGAGTAAATCATGTGGTAGTAATAGTGTGAAAGACAAAAATTCAGATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACAAATAGGGTGAACGGGGTGAATCCAGAGTTCAATGAGGCCAAGAAAGTGAGAAGGCCGGGACTTGTTGATTTGGACATGCTGGAGGACCACAACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAATGGATACACCAGAAGAGTTTGATGAGGGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGATATGGTTAGATTGTCAGATGGAAGAAAGAGCAACAATAAAAATGATGATGACGATAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAAACAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCTCTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAAAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAATGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTATGATGATCGCGTTGGGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGATGAGAGGTCTTTATTCGGAAAATCTACATCTAATGGAGTCTCCTCTTCATCTAAAACAAAACGTGGAGATTTGAAGAGAACCCTTAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACATGACTCTTGTAGTCTTGATAAATATGCACGAGTGCACATCCCTGTGGGACCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTACAAAATCTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGGAAAGGAAGACAGGATTCATGTGGCTGCCCAGTACAAGGCTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGATATGGTAGGGGAAGAAGTTAGGAGTTCTTGGACAGATGAAGATGAGAAAAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAGTGTTTTTGGGATCATCTTTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCTCGCAACCTCACCTTGTTATCACCAAAAAAATCCACAGGCAAAAGGGCAAATAGCAAGTGA 2019 0.4106 MVYLIRVHAVLINSLVGCFGNRSVSTIMGNGEPLDLYKLFMVVKKKGGYETVCKNRLWDLVGEEYGLGVKVGSAVELVYSKHLSALERCLKNVAGGKFSEYGLEGDRVKFQKHLMEAHTESMLENSGEEVEDELERRECGRPDGRKFSGGNRVKCVKPESNGAENENAYEYINGSKSCGSNSVKDKNSDSNGNEYDNVCDYLEGRKLCGTNRVNGVNPEFNEAKKVRRPGLVDLDMLEDHNKGEPIVVKFCGFNTEMDTPEEFDEGKLLTVDASDAESDMVRLSDGRKSNNKNDDDDSDEVLILDPSSVDKNKFGHKRKRESVSEMLIWINSIAKNPCDPALGSIPEKSKWKSCSSQEIWKQALLFRKAVFLKKDFETANEQLSWQSQKMHPSMYDDRVGALYNFRKRLKCDERSLFGKSTSNGVSSSSKTKRGDLKRTLSSRSEDVVDKKLHDSCSLDKYARVHIPVGPNHQAEVPEWTGMTCESDSKWLGTQIWPTKSVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVRSSWTDEDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRANSK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00871 672 ProSiteProfiles ELM2 domain profile. 464 588 IPR000949 -
Viun5g00871 672 Pfam ARID/BRIGHT DNA binding domain 28 87 IPR001606 GO:0003677
Viun5g00871 672 SMART ARID_2 2 87 - -
Viun5g00871 672 MobiDBLite consensus disorder prediction 420 442 - -
Viun5g00871 672 SUPERFAMILY ARID-like 29 99 IPR036431 GO:0003677
Viun5g00871 672 Gene3D - 19 97 IPR036431 GO:0003677
Viun5g00871 672 MobiDBLite consensus disorder prediction 625 672 - -
Viun5g00871 672 SMART bright_3 3 92 IPR001606 GO:0003677
Viun5g00871 672 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Viun5g00871 672 MobiDBLite consensus disorder prediction 626 642 - -
Viun5g00871 672 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 19 665 - -
Viun5g00871 672 ProSiteProfiles ARID domain profile. 1 91 IPR001606 GO:0003677
Viun5g00871 672 SMART ELM2_2 466 518 IPR000949 -
Viun5g00871 672 CDD ARID 30 87 - -
Viun5g00871 672 MobiDBLite consensus disorder prediction 280 297 - -
Viun5g00871 672 MobiDBLite consensus disorder prediction 650 672 - -
Viun5g00871 672 MobiDBLite consensus disorder prediction 280 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00871 Viun-Chr5 5452591 5457065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00871 31 92 ARID Transcription Factor Family AT1G20910 38.462 9.48e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun5g00871 ARID 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00871 - - vun:114182925 1353.19