Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00870 ATGCTTGTTTATCTGATAAGGGTGCATGCTGTTTTGATCAATTCCTTGGTGGGTTGTTTCGGAAACAGATCCGTGTCTACAATAATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGAGACTGTATGTAAGAATAGGTTATGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCGCTGTGGAACTTGTTTACAGCAAACACTTAAGTGCTCTAGAGAGATGTTTGAAGAATGTTGCTGGTGGCAAGTTTTCTGAATATGGTTTAGAGGGTGATAGAGTGAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGAGAATTCTGGTGAGGAGGTAGAAGATGAACTTGAGAGGAGGGAGTGTGGCCGTCCGGATGGGAGGAAGTTCAGTGGTGGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAAAACGAGAATGCATATGAGTATATAAATGGGAGTAAATCATGTGGTAGTAATAGTGTGAAAGACAAAAATTCAGATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACAAATAGGGTGAACGGGGTGAATCCAGAGTTCAATGAGGCCAAGAAAGTGAGAAGGCCGGGACTTGTTGATTTGGACATGCTGGAGGACCACAACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAATGGATACACCAGAAGAGTTTGATGAGGGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGATATGGTTAGATTGTCAGATGGAAGAAAGAGCAACAATAAAAATGATGATGACGATAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAAACAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCTCTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAAAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAATGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTATGATGATCGCGTTGGGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGATGAGAGGTCTTTATTCGGAAAATCTACATCTAATGGAGTCTCCTCTTCATCTAAAACAAAACGTGGAGATTTGAAGAGAACCCTTAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACATGACTCTTGTAGTCTTGATAAATATGCACGAGTGCACATCCCTGTGGGACCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTACAAAATCTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGGAAAGGAAGACAGGATTCATGTGGCTGCCCAGTACAAGGCTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGATATGGTAGGGGAAGAAGTTAGGAGTTCTTGGACAGATGAAGATGAGAAAAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAGTGTTTTTGGGATCATCTTTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCTCGCAACCTCACCTTGTTATCACCAAAAAAATCCACAGGCAAAAGGGCAAATAGCAAGTGA 2022 0.4105 MLVYLIRVHAVLINSLVGCFGNRSVSTIMGNGEPLDLYKLFMVVKKKGGYETVCKNRLWDLVGEEYGLGVKVGSAVELVYSKHLSALERCLKNVAGGKFSEYGLEGDRVKFQKHLMEAHTESMLENSGEEVEDELERRECGRPDGRKFSGGNRVKCVKPESNGAENENAYEYINGSKSCGSNSVKDKNSDSNGNEYDNVCDYLEGRKLCGTNRVNGVNPEFNEAKKVRRPGLVDLDMLEDHNKGEPIVVKFCGFNTEMDTPEEFDEGKLLTVDASDAESDMVRLSDGRKSNNKNDDDDSDEVLILDPSSVDKNKFGHKRKRESVSEMLIWINSIAKNPCDPALGSIPEKSKWKSCSSQEIWKQALLFRKAVFLKKDFETANEQLSWQSQKMHPSMYDDRVGALYNFRKRLKCDERSLFGKSTSNGVSSSSKTKRGDLKRTLSSRSEDVVDKKLHDSCSLDKYARVHIPVGPNHQAEVPEWTGMTCESDSKWLGTQIWPTKSVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVRSSWTDEDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRANSK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00870 673 ProSiteProfiles ARID domain profile. 1 92 IPR001606 GO:0003677
Viun5g00870 673 Gene3D - 20 98 IPR036431 GO:0003677
Viun5g00870 673 SMART ARID_2 3 88 - -
Viun5g00870 673 MobiDBLite consensus disorder prediction 626 673 - -
Viun5g00870 673 CDD ARID 31 88 - -
Viun5g00870 673 MobiDBLite consensus disorder prediction 627 643 - -
Viun5g00870 673 MobiDBLite consensus disorder prediction 421 443 - -
Viun5g00870 673 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Viun5g00870 673 SMART ELM2_2 467 519 IPR000949 -
Viun5g00870 673 MobiDBLite consensus disorder prediction 281 298 - -
Viun5g00870 673 SUPERFAMILY ARID-like 30 100 IPR036431 GO:0003677
Viun5g00870 673 ProSiteProfiles ELM2 domain profile. 465 589 IPR000949 -
Viun5g00870 673 SMART bright_3 4 93 IPR001606 GO:0003677
Viun5g00870 673 MobiDBLite consensus disorder prediction 651 673 - -
Viun5g00870 673 MobiDBLite consensus disorder prediction 281 303 - -
Viun5g00870 673 Pfam ARID/BRIGHT DNA binding domain 29 88 IPR001606 GO:0003677
Viun5g00870 673 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 20 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00870 Viun-Chr5 5452590 5457065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00870 32 93 ARID Transcription Factor Family AT1G20910 38.462 9.66e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun5g00870 ARID 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00870 - - vun:114182925 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00870 5 5452590 5457065 Viun5g00870 5 5452590 5457065 ECH
Viun5g00870 5 5452590 5457065 Viun10g01929 10 33981810 33986450 PCT