Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00869 ATGCTTGTTTATCTGATAAGGGTGCATGCTGTTTTGATCAATTCCTTGGTGGGTTGTTTCGGAAACAGATCCGTGTCTACAATAATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGAGACTGTATGTAAGAATAGGTTATGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCGCTGTGGAACTTGTTTACAGCAAACACTTAAGTGCTCTAGAGAGATGTTTGAAGAATGTTGCTGGTGGCAAGTTTTCTGAATATGGTTTAGAGGGTGATAGAGTGAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGAGAATTCTGGTGAGGAGGTAGAAGATGAACTTGAGAGGAGGGAGTGTGGCCGTCCGGATGGGAGGAAGTTCAGTGGTGGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAAAACGAGAATGCATATGAGTATATAAATGGGAGTAAATCATGTGGTAGTAATAGTGTGAAAGACAAAAATTCAGATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACAAATAGGGTGAACGGGGTGAATCCAGAGTTCAATGAGGCCAAGAAAGTGAGAAGGCCGGGACTTGTTGATTTGGACATGCTGGAGGACCACAACAAGGAAAGTGATATGGTTAGATTGTCAGATGGAAGAAAGAGCAACAATAAAAATGATGATGACGATAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAAACAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCTCTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAAAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAATGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTATGATGATCGCGTTGGGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGATGAGAGGTCTTTATTCGGAAAATCTACATCTAATGGAGTCTCCTCTTCATCTAAAACAAAACGTGGAGATTTGAAGAGAACCCTTAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACATGACTCTTGTAGTCTTGATAAATATGCACGAGTGCACATCCCTGTGGGACCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTACAAAATCTGTAAATTCAAAATGGTGTCTTGTTGAAAGGGACCCTATTGGGAAAGGAAGACAGGATTCATGTGGCTGCCCAGTACAAGGCTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGATATGGTAGGGGAAGAAGTTAGGAGTTCTTGGACAGATGAAGATGAGAAAAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAGTGTTTTTGGGATCATCTTTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCTCGCAACCTCACCTTGTTATCACCAAAAAAATCCACAGGCAAAAGGGCAAATAGCAAGTGA 1920 0.412 MLVYLIRVHAVLINSLVGCFGNRSVSTIMGNGEPLDLYKLFMVVKKKGGYETVCKNRLWDLVGEEYGLGVKVGSAVELVYSKHLSALERCLKNVAGGKFSEYGLEGDRVKFQKHLMEAHTESMLENSGEEVEDELERRECGRPDGRKFSGGNRVKCVKPESNGAENENAYEYINGSKSCGSNSVKDKNSDSNGNEYDNVCDYLEGRKLCGTNRVNGVNPEFNEAKKVRRPGLVDLDMLEDHNKESDMVRLSDGRKSNNKNDDDDSDEVLILDPSSVDKNKFGHKRKRESVSEMLIWINSIAKNPCDPALGSIPEKSKWKSCSSQEIWKQALLFRKAVFLKKDFETANEQLSWQSQKMHPSMYDDRVGALYNFRKRLKCDERSLFGKSTSNGVSSSSKTKRGDLKRTLSSRSEDVVDKKLHDSCSLDKYARVHIPVGPNHQAEVPEWTGMTCESDSKWLGTQIWPTKSVNSKWCLVERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVRSSWTDEDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRANSK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00869 639 ProSiteProfiles ARID domain profile. 1 92 IPR001606 GO:0003677
Viun5g00869 639 MobiDBLite consensus disorder prediction 238 264 - -
Viun5g00869 639 MobiDBLite consensus disorder prediction 238 269 - -
Viun5g00869 639 SMART ARID_2 3 88 - -
Viun5g00869 639 CDD ARID 31 88 - -
Viun5g00869 639 MobiDBLite consensus disorder prediction 617 639 - -
Viun5g00869 639 MobiDBLite consensus disorder prediction 592 639 - -
Viun5g00869 639 Gene3D - 20 98 IPR036431 GO:0003677
Viun5g00869 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Viun5g00869 639 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 20 632 - -
Viun5g00869 639 SMART bright_3 4 93 IPR001606 GO:0003677
Viun5g00869 639 SUPERFAMILY ARID-like 30 100 IPR036431 GO:0003677
Viun5g00869 639 Pfam ARID/BRIGHT DNA binding domain 29 88 IPR001606 GO:0003677
Viun5g00869 639 MobiDBLite consensus disorder prediction 387 409 - -
Viun5g00869 639 MobiDBLite consensus disorder prediction 593 609 - -
Viun5g00869 639 ProSiteProfiles ELM2 domain profile. 431 555 IPR000949 -
Viun5g00869 639 SMART ELM2_2 433 485 IPR000949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00869 Viun-Chr5 5452588 5457065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00869 32 93 ARID Transcription Factor Family AT1G20910 38.462 9.67e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun5g00869 ARID 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00869 - - vun:114182925 1269.22