Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00863 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCAGTGTATTACTATTGCCCGCCGACTTTTGAAGAGCGCGAGTCTTTAACCTCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCTGTGCCTGATACTTTCCAGCCCCCTCCTGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGGGAAACAGTTAGTAGTTTTGAAGCTTTAATTACACGTGAAGATGTTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCAGTCCAACATCTCCAAGGAAGCAAGAACTATCAAAACCAAATGAAAGTAAAGTATTATTGGTAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCCTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 558 0.4122 MGGCCCSARKPNLQGAPVYYYCPPTFEERESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETVSSFEALITREDVEESNCKAQTNSSPTSPRKQELSKPNESKVLLVEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00863 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 184 - -
Viun5g00863 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Viun5g00863 185 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Viun5g00863 185 SUPERFAMILY RING/U-box 132 183 - -
Viun5g00863 185 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Viun5g00863 185 Pfam Ring finger domain 138 179 IPR001841 -
Viun5g00863 185 SMART ring_2 139 179 IPR001841 -
Viun5g00863 185 MobiDBLite consensus disorder prediction 106 121 - -
Viun5g00863 185 MobiDBLite consensus disorder prediction 102 127 - -
Viun5g00863 185 CDD RING-H2_AIRP1-like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00863 Viun-Chr5 5425060 5428963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00863 1 185 C3H Transcription Factor Family AT4G00335 55.914 1.49e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00863 - - gmx:100803758 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00863 5 5425060 5428963 Viun5g00863 5 5425060 5428963 ECH