Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00857 ATGGGATTTCCGGTAGGGTATCCGGAGGTGCTGGTTCCGAAGCTCTTCCTCCACGCGCTCTCGCTCCTCGCGTGGCTCCGCTCGCTCGTCGCAGCGCTCTTCCGCCTCCTCCATCTCTCCGACCTTCTCGACACCGACGCTTCCGCCCTCGCTTGGCCGCCGGAGTCCCAGCCGCCGCGCGCTCCGACTCTCTCCGCGCTCCTCATCCGCGAGTTTCTTCCCGTGACTGCGTTCCGTGACCTCGACGACGCCGGCGAGTCCCCTCCGTCGCCGACGGGATGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGGTGCATGGCAAACTGCAAACACATGTTCCACCGCGCGTGCGTGGACCGATGGATCGATCACGATCAGAAGACGTGTCCTCTGTGTAGGACACCATTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGACTATGGGCAGCTTCTGGTGTTTCGCAGTTTTATCAAGACGATTATACTCCTTCTCTCTGA 516 0.6202 MGFPVGYPEVLVPKLFLHALSLLAWLRSLVAALFRLLHLSDLLDTDASALAWPPESQPPRAPTLSALLIREFLPVTAFRDLDDAGESPPSPTGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPSL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00857 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 142 IPR013083 -
Viun5g00857 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 157 - -
Viun5g00857 171 SMART ring_2 94 136 IPR001841 -
Viun5g00857 171 SUPERFAMILY RING/U-box 93 146 - -
Viun5g00857 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Viun5g00857 171 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00857 Viun-Chr5 5397451 5398236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00857 1 158 C3H Transcription Factor Family AT1G63840 44.025 2.96e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00857 K16281 - gmx:100813224 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00857 5 5397451 5398236 Viun5g00857 5 5397451 5398236 ECH
Viun5g00857 5 5397451 5398236 Viun10g01941 10 34116896 34117653 PCT