Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00850 ATGGGGAACGACTCGGACGAGTCAGATGAGGAGTATGACCCGGTGGAGGATGTGCAGCGAGTCATCGAATCGGTGGTTCAGATCGGGGACTACCGGAGGCCGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCGATCTTGGAAGAGCTTCGCGACATACCACAACCCTTTACGAAAAACGGCGTCGCTTGGTTAGTCAAATTCAAAGAAGCGCTTTTGTACGCCAAGGATTTGTTGCAACTGTGCAGCCAAGGAAGCAAGATTTACCTCTCTTTGGAGACAGAGACGATAATGGGCACGTTTCAGAAAGTGTACGAAAGATTAGGCCAAGCGTTTGGTGCCGTGCCTTGTGAGGAATTAGGCATCTCGGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTGAAGCGAGCGAGGAGAAGAACTGATACACAGGACATAGAGCTTGCGATGGATATGATGGTGGTGTTCTCTGACGAGGATGATAGAAATTCAGACAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTTCATAGCGTTGAGGAACTTAACGTAGAAACAGTGGCCATTAGGCAACTTGCAGAAGAAAGAAAAGGGCAACATATTGAGAGTACCAAGCGAATAATTAAACTTCTGAACAAATTCAAACACGTGGCAGGCATGCCAGAAACCAGTGTCCTCGATGATCCTGTGGCACCCAAGATGCTAGAGAGGTGCACCTCTTTGGTCATCCCTCACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATCATAGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAGGTGGTTCCAAGCCAACCACAGGACATGCCCAAAGACCAGGCAACCTTTGCAGCACACGTCACTGGCACCGAACTGCGCATTGAGAAGTTTGATCGAAGAATGGTGTGAGAACAACAACTTCAAGCTTCCCAAAAGGTACGATTCGGCTCAAGAAAGTTGTCCCGGAAAAGATGAAATCCCTGCGTTGGTTGAGAGCTTAGGGTCGATTCATTTGGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGAATGCTGTCAAAGGAAAACGCTGAGAACAGGGTTCTGGTTGCTGAACGTGGAGGAATACCACCACTGGTGCAGCTACTGTCGTATCCAGATTCAAAAATCCAAGAGCATGCAGTGACAGCACTTTTAAACCTATCAATCGATGAGGGTAACAAGAGACTCATATCCTCAGAAGGTGCTATTCCAGCTATCATAGAAGTTCTTGAGAATGGAAGTTGTGTGGCTAAGGAAAACTCGGCAGCAACGTTGTTTAGCTTGTCGATGATTGATGAGATTAAAGAGATTGTGGGTCAATCAAACGGGTTACCACCATTGGTGAATTTGTTGAAGAATGGAACGGTTCGAGGGAAGAAAGATGCTATCACAGCTCTCTTCAACTTGTCTCTGAACCATGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTAGCACCCTTGCTTCAGTTGCTGAAGGACGTAAACTTAGGGTTGATTGATGAGGCTCTCTCCATTCTGCTACTCCTTGTGTTAAATTCTGAAGGAAGACAAGAGATTGGACAACTTAGTTTCATCGAAACTCTTGTTCAGTTCATGCGAGAAGGGAGTCCCAAGAACAAGGAATGTGCAGCCTCTGTTCTTCTTGAGTTGTGCTTAAATAACTCGTCCTTTATATTGGCAGCACTTCAGTTTGGAGTGTATGAACATTTGATAGAAATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCGATGACGATCTTAGAGCTCGTAACCAAGAGCGAGCAAATTTAA 1875 0.4608 MGNDSDESDEEYDPVEDVQRVIESVVQIGDYRRPQRRECHNLVRRFKLMLPILEELRDIPQPFTKNGVAWLVKFKEALLYAKDLLQLCSQGSKIYLSLETETIMGTFQKVYERLGQAFGAVPCEELGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLELHSVEELNVETVAIRQLAEERKGQHIESTKRIIKLLNKFKHVAGMPETSVLDDPVAPKMLERCTSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIERWFQANHRTCPKTRQPLQHTSLAPNCALRSLIEEWCENNNFKLPKRYDSAQESCPGKDEIPALVESLGSIHLEEQRKAVEKIRMLSKENAENRVLVAERGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISSEGAIPAIIEVLENGSCVAKENSAATLFSLSMIDEIKEIVGQSNGLPPLVNLLKNGTVRGKKDAITALFNLSLNHANKGRAIRAGIVAPLLQLLKDVNLGLIDEALSILLLLVLNSEGRQEIGQLSFIETLVQFMREGSPKNKECAASVLLELCLNNSSFILAALQFGVYEHLIEIKQNGTNRAQRKAMTILELVTKSEQI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00850 624 CDD RING-Ubox_PUB 255 307 IPR045210 -
Viun5g00850 624 Pfam Armadillo/beta-catenin-like repeat 458 495 IPR000225 GO:0005515
Viun5g00850 624 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Viun5g00850 624 Coils Coil 129 149 - -
Viun5g00850 624 SMART arm_5 374 414 IPR000225 GO:0005515
Viun5g00850 624 SMART arm_5 538 578 IPR000225 GO:0005515
Viun5g00850 624 SMART arm_5 456 496 IPR000225 GO:0005515
Viun5g00850 624 SMART arm_5 415 455 IPR000225 GO:0005515
Viun5g00850 624 SMART arm_5 497 537 IPR000225 GO:0005515
Viun5g00850 624 SUPERFAMILY ARM repeat 333 618 IPR016024 -
Viun5g00850 624 Gene3D - 445 622 IPR011989 -
Viun5g00850 624 PANTHER U BOX DOMAIN-CONTAINING 34 617 - -
Viun5g00850 624 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Viun5g00850 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 328 IPR013083 -
Viun5g00850 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Viun5g00850 624 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Viun5g00850 624 Gene3D - 10 123 IPR036537 GO:0007166
Viun5g00850 624 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
Viun5g00850 624 FunFam RING-type E3 ubiquitin transferase 11 124 - -
Viun5g00850 624 Gene3D - 333 444 IPR011989 -
Viun5g00850 624 FunFam RING-type E3 ubiquitin transferase 330 624 - -
Viun5g00850 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 509 IPR000225 GO:0005515
Viun5g00850 624 SUPERFAMILY RING/U-box 253 330 - -
Viun5g00850 624 FunFam RING-type E3 ubiquitin transferase 250 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00850 Viun-Chr5 5343170 5345732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00850 15 624 U-box Gene Family AT5G42340 62.295 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00850 - - gmx:100777362 1012.29