Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00845 ATGTCAATCTTCGACGGCGCTTTCATGAACACGCAACTTTCCAAGCACACTTCTATCTTCGGGCTCCGTCTCTGGGTCGTGATCGGAATCCTCATCGGCGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGTCTGGTATCTCGTCGGAACCGCCGCCGCTCCGTCGCCGGCTATAAGGTCGCCGGATCCGCCCAAGCGGCGAAGGAAATCCATACGATAGTGCACATTCCTGGACCCCACATGCTCCGGCCTCCGGCGAAGGCGCCGGAGATCCAGGTGGAGATGGGGAAGGCAGAACACCGGGTGGTTGTCCACTGCGATAGGGTTTCGAGTGAGGAGAGTAAGGGAACGATGGGGAGTGGGTGCGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTTGGGCTTGGGCCTGAGGTTTCTCATCTTGGTTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGCGGGTTGTGTCCGGAAAACGTGGTTGGGGAAGGTGGCTATGGCATTGTCTATCATGGGGTGCTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAAGTAGAAGCTATTGGTCGAGTGCGACACAAAAATCTTGTTCGGTTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGTAATCTAGAACAATGGTTGCATGGGGATGTCGGACCTGTAAGCCCTTTGACATGGAACATACGCATGAACGTTATATTGGGAACTGCAAGAGGATTAGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACCGGAATGCTGACCGAGAAGAGTGATATTTATAGCTTTGGAATCCTCATCATGGAGATAATAACTGGAAGAAGCCCTGTTGATTATGGTAGACCGCAGGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTCGGGAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCCCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCAAAGATGGGACATGTGATCCACATGCTTGAGGCAGACGACATGTTATTCCACAATGAACACAAAACTGATGGAGAGTCTTCCCGTTCCTATCAAAATGAACATAAGGACTCAAATTTAAACAAGAGAACAGATGGTGTCAGTGATCAAAGTGAAGATGGTAGTAGTAGTAGATGGAGATGA 1461 0.4825 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGYKVAGSAQAAKEIHTIVHIPGPHMLRPPAKAPEIQVEMGKAEHRVVVHCDRVSSEESKGTMGSGCETTSSFGSGSVGGLGLGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYGRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDMLFHNEHKTDGESSRSYQNEHKDSNLNKRTDGVSDQSEDGSSSRWR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00845 486 FunFam Putative receptor-like serine/threonine-protein kinase 241 451 - -
Viun5g00845 486 Gene3D Transferase(Phosphotransferase) domain 1 241 453 - -
Viun5g00845 486 SMART serkin_6 165 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00845 486 PANTHER OS01G0323000 PROTEIN 7 463 - -
Viun5g00845 486 Gene3D Phosphorylase Kinase; domain 1 149 240 - -
Viun5g00845 486 CDD STKc_IRAK 171 437 - -
Viun5g00845 486 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Viun5g00845 486 MobiDBLite consensus disorder prediction 447 486 - -
Viun5g00845 486 SUPERFAMILY Protein kinase-like (PK-like) 144 437 IPR011009 -
Viun5g00845 486 Pfam Protein kinase domain 169 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00845 486 MobiDBLite consensus disorder prediction 447 475 - -
Viun5g00845 486 ProSiteProfiles Protein kinase domain profile. 165 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00845 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Viun5g00845 486 FunFam Probable serine/threonine-protein kinase At1g01540 145 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00845 Viun-Chr5 5315449 5319601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00845 104 464 Receptor kinase-like Gene Family AT4G02010 41.096 1.70e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Viun5g00845 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00845 - - gmx:100817295 865.914