Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00835 ATGGTGTCCCTCAACTCAAACCCCCCTCAAACTTTTCCCTTCTTCGACCCCTTCAACATGGAGGATCCCAACAAGAAGGTTCGGAAGCCTTACACCATTACCAAGTCCAGAGAGAACTGGACGGACCACGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTTATCCAGATAAGAAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGTCCGAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTCACTATATCCAAAGTTACGAAGCCTTTGCAATCTTCATCTGCCTTGTCAGAATCATCATTCATTTATAGGCCAGACTCATCACCTGTGCTTAGACCTGCAGTTAGCAGTGTGCCATTGCCATCTTGGGGTTATAATCTTACGCCACAAGCTGGTCTTCTTTCTAAAGTGACAAAAGATCATATGGTATTGAATCAAAAAATCAACCCCTTCAATTACTGCTACAGCAGTAGTAGTGAGAGCAAACAAACAGATCAGGGTGACCAAGGCCAGCCAATTAAAGCAATGCCAGATTTTGCACAAGTATATAGCTTCATTGGAAGTGTGTTCGATCCTAATGTGACCAATCATTTACAAACACTGCAACAGATGGACCCAATAAATGTGAAAACCGTGTTGCTGTTGATGAGAAACCTCTCCACCAATTTAAGAAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTACAATGCTAACTCGGAGAGAAAAAAATCATCTCGGCCATCTTTAACGGACAGATCAGAGAGTGTTATCTTATCTGCTTAA 897 0.4214 MVSLNSNPPQTFPFFDPFNMEDPNKKVRKPYTITKSRENWTDHEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKVTKPLQSSSALSESSFIYRPDSSPVLRPAVSSVPLPSWGYNLTPQAGLLSKVTKDHMVLNQKINPFNYCYSSSSESKQTDQGDQGQPIKAMPDFAQVYSFIGSVFDPNVTNHLQTLQQMDPINVKTVLLLMRNLSTNLRSPEFENERRMLSLYNANSERKKSSRPSLTDRSESVILSA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00835 298 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Viun5g00835 298 PANTHER SWI/SNF COMPLEX-RELATED 20 269 - -
Viun5g00835 298 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Viun5g00835 298 CDD SANT 39 82 IPR001005 -
Viun5g00835 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Viun5g00835 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Viun5g00835 298 MobiDBLite consensus disorder prediction 88 110 - -
Viun5g00835 298 SMART sant 36 84 IPR001005 -
Viun5g00835 298 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Viun5g00835 298 Gene3D - 39 87 - -
Viun5g00835 298 MobiDBLite consensus disorder prediction 276 298 - -
Viun5g00835 298 FunFam protein REVEILLE 6 isoform X1 39 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00835 Viun-Chr5 5274715 5280982 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun5g00835 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00835 - - gmx:100791774 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00835 5 5274715 5280982 Viun5g00835 5 5274715 5280982 ECH
Viun10g01974 10 34374338 34380594 Viun5g00835 5 5274715 5280982 ECH
Viun5g00835 5 5274715 5280982 Viun10g01974 10 34374338 34380594 PCT