Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00830 ATGTTGCTTTTCTTTCTCTTTTGGCTCCATGCCGTAATGACAGCATGTGAAGCCGGGTTCACACCAGATTTCCATAGCGCCAACTACTGTTTTCCAAGTGTGAACTTCACAGCCAATAGCACCTTCGACACCAACCTGCGCACCCTCTTATCCACTCTCACTTCCAACACAGAAATCAACTACGGTTTCTACAATTTCTTACAAGGCCAGGGCACAGACAAAGTAAACGCCATAGGGTTATGCAGAGGAGATGTTAAGCCAGACGAGTGTCGCAGCTGCCTCAACTCCTCTCAAACCAATCTCACACAGCTTTGTCCAAACCAGAAAGAGGCAATTAAGTGGGAAGAGAAATGCATGGTGCGCTATTCCAACATCTCAATATTTCACACCATGGAGTATTCTCCTTCCTATCAAATGCACAACGTCAATAATGCAACAGATGTGGATGAGTTCAATAAAGTGTTAGGTGGGTTACTAAGAAATCTAAGAGACAAAGCTGCAGGAGGTGACTCTCGTCGTAAGTATGCCACGGACACTGCAATTGTTGCAAGTTTTCAAACCATTTACGGTCTTATGCAGTGTACACCTGACCTCTCAACCCAAGATTGCGGTGACTGCTTGGATTGGAGTATCTCAAGTATCCGAAAGCTTTCTAAAGACAGGGTTGGTGCCGTAGTTCTTCGACCCAGTTGCAATGTTAGATTTGAAATTTACCCCTTCTACGACTCCACTACCATATTAGACCCTGCACTACCACCTGCATCACCTTCACTCCACCCACACCAAGAAGATCACAGCAACTATTTGCGAACTGCAACCATCATAGTTCTGCCAACTGTTCTCGTTGTTCTTGTTCTGCTCATTGTTATTAGCAGATACATCAGAAGGAAAGCAAGGAAAAATCTTCCATCTGAAGAAGATGGAGACGGTGATGAAATTGAAGTGGTTGAATCATTGCAATTCAACTTGGACACAATACTAGTCGCGACAAATAACTTCTCTGATTCTAATAAATTAGGAGAAGGTGGGTTTGGTGCTGTTTACCAGGGAAAGCTCTCTAATGGACAAGAGATTGCTGTCAAAAGGTTGTCAAGGAATTCTGGTCAAGGAGACTTGGAATTTAAGAATGAAGTCATTTTGTTGGCTAAGCTTCAGCACAGAAATTTAGTCAGGCTTCTTGGTTTTAGTTTGCGAGGGAGAGAAAAGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTTCTTCATATTTGGTATTATTAACCTTTTCTTGTTTTTCTCTATTGCTTTAGTTCTGTTCATGAAAAAGACCACCAACTATACTAACTCTTCTGAAACTCATTGCTTGACACAAATAGATCCAACAAAGAAAGCACAATTGGATTGGGATACACTTTACAAAATCATTAAAGGCATTGCTCGAGGTCTTCTTTATCTTCACCAAGACTCACGATTACGCATTATACATCGTGATCTCAAAGCAAGTAATATTCTCTTAGATGAAGAAATGACTCCTAAAATATCAGATTTTGGTACGGCAAGATTAATTGTTGCAGATCACACACAAGAAAATACAAGCAGAGTTGTTGGAACCTATGGATACATGGCACCAGAATACATAATGCATGGACAGTTTTCAGTGAAATCAGATGTTTTTAGTTTTGGTGTGCTGGTTCTTGAGATTGTAAGTGGCCAAAAGAACCATGGTGTTCGTCATGAGAAGAATGGGGAAGATCTATTGAGCTTTGCATGGAGAAACTGGAGAGAGGGGACAGTTACAAGTATTATAGATCAAGCATTGAAGAACAGTTCACAAAATGAAATGATAAGATGCATCCACATTGGTTTACTGTGTGTTGAAGAAGATTTAAACAATAGACCAACCATGGCTAACGTTGCACTCATGCTCAACAGTTGTTCTATCAGTCTCCCTGTGCCTAAAAAACCTGCATTTTTGATAGATAGTGCAACTGAAAGCCTCCCAAACATGTCATGGGATGATAATTCATGGGCAACAAAATCAACTCAATCCACTGCAAGATCAGCTCAGGAATCAGTGAATGAAGCTTCAATTACTGAATTATACCCTCGTTAG 2100 0.4057 MLLFFLFWLHAVMTACEAGFTPDFHSANYCFPSVNFTANSTFDTNLRTLLSTLTSNTEINYGFYNFLQGQGTDKVNAIGLCRGDVKPDECRSCLNSSQTNLTQLCPNQKEAIKWEEKCMVRYSNISIFHTMEYSPSYQMHNVNNATDVDEFNKVLGGLLRNLRDKAAGGDSRRKYATDTAIVASFQTIYGLMQCTPDLSTQDCGDCLDWSISSIRKLSKDRVGAVVLRPSCNVRFEIYPFYDSTTILDPALPPASPSLHPHQEDHSNYLRTATIIVLPTVLVVLVLLIVISRYIRRKARKNLPSEEDGDGDEIEVVESLQFNLDTILVATNNFSDSNKLGEGGFGAVYQGKLSNGQEIAVKRLSRNSGQGDLEFKNEVILLAKLQHRNLVRLLGFSLRGREKLLVYEFVPNKSLDFFIFGIINLFLFFSIALVLFMKKTTNYTNSSETHCLTQIDPTKKAQLDWDTLYKIIKGIARGLLYLHQDSRLRIIHRDLKASNILLDEEMTPKISDFGTARLIVADHTQENTSRVVGTYGYMAPEYIMHGQFSVKSDVFSFGVLVLEIVSGQKNHGVRHEKNGEDLLSFAWRNWREGTVTSIIDQALKNSSQNEMIRCIHIGLLCVEEDLNNRPTMANVALMLNSCSISLPVPKKPAFLIDSATESLPNMSWDDNSWATKSTQSTARSAQESVNEASITELYPR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00830 699 Gene3D - 25 126 IPR038408 -
Viun5g00830 699 Gene3D - 134 240 IPR038408 -
Viun5g00830 699 FunFam Cysteine-rich receptor-like protein kinase 17 302 408 - -
Viun5g00830 699 ProSiteProfiles Gnk2-homologous domain profile. 133 240 IPR002902 -
Viun5g00830 699 MobiDBLite consensus disorder prediction 666 699 - -
Viun5g00830 699 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Viun5g00830 699 FunFam Cysteine-rich receptor-like protein kinase 28 443 646 - -
Viun5g00830 699 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Viun5g00830 699 Gene3D Phosphorylase Kinase; domain 1 298 408 - -
Viun5g00830 699 Pfam Protein tyrosine and serine/threonine kinase 336 635 IPR001245 GO:0004672|GO:0006468
Viun5g00830 699 CDD STKc_IRAK 339 639 - -
Viun5g00830 699 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 698 - -
Viun5g00830 699 Gene3D Transferase(Phosphotransferase) domain 1 448 646 - -
Viun5g00830 699 Pfam Salt stress response/antifungal 143 237 IPR002902 -
Viun5g00830 699 Pfam Salt stress response/antifungal 34 124 IPR002902 -
Viun5g00830 699 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 127 - -
Viun5g00830 699 SUPERFAMILY Protein kinase-like (PK-like) 319 667 IPR011009 -
Viun5g00830 699 SMART serkin_6 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00830 699 FunFam Cysteine-rich receptor-like protein kinase 10 135 240 - -
Viun5g00830 699 MobiDBLite consensus disorder prediction 666 692 - -
Viun5g00830 699 ProSiteProfiles Protein kinase domain profile. 333 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00830 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00830 Viun-Chr5 5244619 5247653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00830 1 699 Receptor kinase-like Gene Family AT4G21410 44.780 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g00830 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00830 - - pvu:PHAVU_008G058700g 956.822