Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00829 ATGTTGCTTTTCTTTCTCTTTTGGCTCCATGCCGTAATGACAGCATGTGAAGCCGGGTTCACACCAGATTTCCATAGCGCCAACTACTGTTTTCCAAGTGTGAACTTCACAGCCAATAGCACCTTCGACACCAACCTGCGCACCCTCTTATCCACTCTCACTTCCAACACAGAAATCAACTACGGTTTCTACAATTTCTTACAAGGCCAGGGCACAGACAAAGTAAACGCCATAGGGTTATGCAGAGGAGATGTTAAGCCAGACGAGTGTCGCAGCTGCCTCAACTCCTCTCAAACCAATCTCACACAGCTTTGTCCAAACCAGAAAGAGGCAATTAAGTGGGAAGAGAAATGCATGGTGCGCTATTCCAACATCTCAATATTTCACACCATGGAGTATTCTCCTTCCTATCAAATGCACAACGTCAATAATGCAACAGATGTGGATGAGTTCAATAAAGTGTTAGGTGGGTTACTAAGAAATCTAAGAGACAAAGCTGCAGGAGGTGACTCTCGTCGTAAGTATGCCACGGACACTGCAATTGTTGCAAGTTTTCAAACCATTTACGGTCTTATGCAGTGTACACCTGACCTCTCAACCCAAGATTGCGGTGACTGCTTGGATTGGAGTATCTCAAGTATCCGAAAGCTTTCTAAAGACAGGGTTGGTGCCGTAGTTCTTCGACCCAGTTGCAATGTTAGATTTGAAATTTACCCCTTCTACGACTCCACTACCATATTAGACCCTGCACTACCACCTGCATCACCTTCACTCCACCCACACCAAGAAGATCACAGCAACTATTTGCGAACTGCAACCATCATAGTTCTGCCAACTGTTCTCGTTGTTCTTGTTCTGCTCATTGTTATTAGCAGATACATCAGAAGGAAAGCAAGGAAAAATCTTCCATCTGAAGAAGATGGAGACGGTGATGAAATTGAAGTGGTTGAATCATTGCAATTCAACTTGGACACAATACTAGTCGCGACAAATAACTTCTCTGATTCTAATAAATTAGGAGAAGGTGGGTTTGGTGCTGTTTACCAGGGAAAGCTCTCTAATGGACAAGAGATTGCTGTCAAAAGGTTGTCAAGGAATTCTGGTCAAGGAGACTTGGAATTTAAGAATGAAGTCATTTTGTTGGCTAAGCTTCAGCACAGAAATTTAGTCAGGCTTCTTGGTTTTAGTTTGCGAGGGAGAGAAAAGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTTCTTCATATTTGATCCAACAAAGAAAGCACAATTGGATTGGGATACACTTTACAAAATCATTAAAGGCATTGCTCGAGGTCTTCTTTATCTTCACCAAGACTCACGATTACGCATTATACATCGTGATCTCAAAGCAAGTAATATTCTCTTAGATGAAGAAATGACTCCTAAAATATCAGATTTTGGTACGGCAAGATTAATTGTTGCAGATCACACACAAGAAAATACAAGCAGAGTTGTTGGAACCTATGGATACATGGCACCAGAATACATAATGCATGGACAGTTTTCAGTGAAATCAGATGTTTTTAGTTTTGGTGTGCTGGTTCTTGAGATTGTAAGTGGCCAAAAGAACCATGGTGTTCGTCATGAGAAGAATGGGGAAGATCTATTGAGCTTTGCATGGAGAAACTGGAGAGAGGGGACAGTTACAAGTATTATAGATCAAGCATTGAAGAACAGTTCACAAAATGAAATGATAAGATGCATCCACATTGGTTTACTGTGTGTTGAAGAAGATTTAAACAATAGACCAACCATGGCTAACGTTGCACTCATGCTCAACAGTTGTTCTATCAGTCTCCCTGTGCCTAAAAAACCTGCATTTTTGATAGATAGTGCAACTGAAAGCCTCCCAAACATGTCATGGGATGATAATTCATGGGCAACAAAATCAACTCAATCCACTGCAAGATCAGCTCAGGAATCAGTGAATGAAGCTTCAATTACTGAATTATACCCTCGTTAG 1995 0.4105 MLLFFLFWLHAVMTACEAGFTPDFHSANYCFPSVNFTANSTFDTNLRTLLSTLTSNTEINYGFYNFLQGQGTDKVNAIGLCRGDVKPDECRSCLNSSQTNLTQLCPNQKEAIKWEEKCMVRYSNISIFHTMEYSPSYQMHNVNNATDVDEFNKVLGGLLRNLRDKAAGGDSRRKYATDTAIVASFQTIYGLMQCTPDLSTQDCGDCLDWSISSIRKLSKDRVGAVVLRPSCNVRFEIYPFYDSTTILDPALPPASPSLHPHQEDHSNYLRTATIIVLPTVLVVLVLLIVISRYIRRKARKNLPSEEDGDGDEIEVVESLQFNLDTILVATNNFSDSNKLGEGGFGAVYQGKLSNGQEIAVKRLSRNSGQGDLEFKNEVILLAKLQHRNLVRLLGFSLRGREKLLVYEFVPNKSLDFFIFDPTKKAQLDWDTLYKIIKGIARGLLYLHQDSRLRIIHRDLKASNILLDEEMTPKISDFGTARLIVADHTQENTSRVVGTYGYMAPEYIMHGQFSVKSDVFSFGVLVLEIVSGQKNHGVRHEKNGEDLLSFAWRNWREGTVTSIIDQALKNSSQNEMIRCIHIGLLCVEEDLNNRPTMANVALMLNSCSISLPVPKKPAFLIDSATESLPNMSWDDNSWATKSTQSTARSAQESVNEASITELYPR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00829 664 FunFam Cysteine-rich receptor-like protein kinase 10 135 240 - -
Viun5g00829 664 CDD STKc_IRAK 339 604 - -
Viun5g00829 664 Gene3D - 25 126 IPR038408 -
Viun5g00829 664 Gene3D - 134 240 IPR038408 -
Viun5g00829 664 ProSiteProfiles Gnk2-homologous domain profile. 133 240 IPR002902 -
Viun5g00829 664 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Viun5g00829 664 FunFam cysteine-rich receptor-like protein kinase 10 409 610 - -
Viun5g00829 664 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Viun5g00829 664 SMART serkin_6 333 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00829 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 663 - -
Viun5g00829 664 Pfam Salt stress response/antifungal 143 237 IPR002902 -
Viun5g00829 664 Pfam Salt stress response/antifungal 34 124 IPR002902 -
Viun5g00829 664 MobiDBLite consensus disorder prediction 631 664 - -
Viun5g00829 664 Gene3D Phosphorylase Kinase; domain 1 298 408 - -
Viun5g00829 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 127 - -
Viun5g00829 664 FunFam Cysteine-rich receptor-like protein kinase 17 302 408 - -
Viun5g00829 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Viun5g00829 664 Pfam Protein tyrosine and serine/threonine kinase 336 600 IPR001245 GO:0004672|GO:0006468
Viun5g00829 664 ProSiteProfiles Protein kinase domain profile. 333 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00829 664 Gene3D Transferase(Phosphotransferase) domain 1 409 611 - -
Viun5g00829 664 MobiDBLite consensus disorder prediction 631 657 - -
Viun5g00829 664 SUPERFAMILY Protein kinase-like (PK-like) 319 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00829 Viun-Chr5 5244619 5247653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00829 1 664 Receptor kinase-like Gene Family AT4G21410 47.042 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g00829 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00829 - - pvu:PHAVU_008G058700g 981.089