Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00828 ATGTTGCTTTTCTTTCTCTTTTGGCTCCATGCCGTAATGACAGCATGTGAAGCCGGGTTCACACCAGATTTCCATAGCGCCAACTACTGTTTTCCAAGTGTGAACTTCACAGCCAATAGCACCTTCGACACCAACCTGCGCACCCTCTTATCCACTCTCACTTCCAACACAGAAATCAACTACGGTTTCTACAATTTCTTACAAGGCCAGGGCACAGACAAAGTAAACGCCATAGGGTTATGCAGAGGAGATGTTAAGCCAGACGAGTGTCGCAGCTGCCTCAACTCCTCTCAAACCAATCTCACACAGCTTTGTCCAAACCAGAAAGAGGCAATTAAGTGGGAAGAGAAATGCATGGTGCGCTATTCCAACATCTCAATATTTCACACCATGGAGTATTCTCCTTCCTATCAAATGCACAACGTCAATAATGCAACAGATGTGGATGAGTTCAATAAAGTGTTAGGTGGGTTACTAAGAAATCTAAGAGACAAAGCTGCAGGAGGTGACTCTCGTCGTAAGTATGCCACGGACACTGCAATTGTTGCAAGTTTTCAAACCATTTACGGTCTTATGCAGTGTACACCTGACCTCTCAACCCAAGATTGCGGTGACTGCTTGGATTGGAGTATCTCAAGTATCCGAAAGCTTTCTAAAGACAGGGTTGGTGCCGTAGTTCTTCGACCCAGTTGCAATGTTAGATTTGAAATTTACCCCTTCTACGACTCCACTACCATATTAGACCCTGCACTACCACCTGCATCACCTTCACTCCACCCACACCAAGAAGATCACAGCAACTATTTGCGAACTGCAACCATCATAGTTCTGCCAACTGTTCTCGTTGTTCTTGTTCTGCTCATTGTTATTAGCAGATACATCAGAAGGAAAGCAAGGAAAAATCTTCCATCTGAAGATGGAGACGGTGATGAAATTGAAGTGGTTGAATCATTGCAATTCAACTTGGACACAATACTAGTCGCGACAAATAACTTCTCTGATTCTAATAAATTAGGAGAAGGTGGGTTTGGTGCTGTTTACCAGGGAAAGCTCTCTAATGGACAAGAGATTGCTGTCAAAAGGTTGTCAAGGAATTCTGGTCAAGGAGACTTGGAATTTAAGAATGAAGTCATTTTGTTGGCTAAGCTTCAGCACAGAAATTTAGTCAGGCTTCTTGGTTTTAGTTTGCGAGGGAGAGAAAAGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTTCTTCATATTTGGTATTATTAACCTTTTCTTGTTTTTCTCTATTGCTTTAGTTCTGTTCATGAAAAAGACCACCAACTATACTAACTCTTCTGAAACTCATTGCTTGACACAAATAGATCCAACAAAGAAAGCACAATTGGATTGGGATACACTTTACAAAATCATTAAAGGCATTGCTCGAGGTCTTCTTTATCTTCACCAAGACTCACGATTACGCATTATACATCGTGATCTCAAAGCAAGTAATATTCTCTTAGATGAAGAAATGACTCCTAAAATATCAGATTTTGGTACGGCAAGATTAATTGTTGCAGATCACACACAAGAAAATACAAGCAGAGTTGTTGGAACCTATGGATACATGGCACCAGAATACATAATGCATGGACAGTTTTCAGTGAAATCAGATGTTTTTAGTTTTGGTGTGCTGGTTCTTGAGATTGTAAGTGGCCAAAAGAACCATGGTGTTCGTCATGAGAAGAATGGGGAAGATCTATTGAGCTTTGCATGGAGAAACTGGAGAGAGGGGACAGTTACAAGTATTATAGATCAAGCATTGAAGAACAGTTCACAAAATGAAATGATAAGATGCATCCACATTGGTTTACTGTGTGTTGAAGAAGATTTAAACAATAGACCAACCATGGCTAACGTTGCACTCATGCTCAACAGTTGTTCTATCAGTCTCCCTGTGCCTAAAAAACCTGCATTTTTGATAGATAGTGCAACTGAAAGCCTCCCAAACATGTCATGGGATGATAATTCATGGGCAACAAAATCAACTCAATCCACTGCAAGATCAGCTCAGGAATCAGTGAATGAAGCTTCAATTACTGAATTATACCCTCGTTAG 2097 0.4058 MLLFFLFWLHAVMTACEAGFTPDFHSANYCFPSVNFTANSTFDTNLRTLLSTLTSNTEINYGFYNFLQGQGTDKVNAIGLCRGDVKPDECRSCLNSSQTNLTQLCPNQKEAIKWEEKCMVRYSNISIFHTMEYSPSYQMHNVNNATDVDEFNKVLGGLLRNLRDKAAGGDSRRKYATDTAIVASFQTIYGLMQCTPDLSTQDCGDCLDWSISSIRKLSKDRVGAVVLRPSCNVRFEIYPFYDSTTILDPALPPASPSLHPHQEDHSNYLRTATIIVLPTVLVVLVLLIVISRYIRRKARKNLPSEDGDGDEIEVVESLQFNLDTILVATNNFSDSNKLGEGGFGAVYQGKLSNGQEIAVKRLSRNSGQGDLEFKNEVILLAKLQHRNLVRLLGFSLRGREKLLVYEFVPNKSLDFFIFGIINLFLFFSIALVLFMKKTTNYTNSSETHCLTQIDPTKKAQLDWDTLYKIIKGIARGLLYLHQDSRLRIIHRDLKASNILLDEEMTPKISDFGTARLIVADHTQENTSRVVGTYGYMAPEYIMHGQFSVKSDVFSFGVLVLEIVSGQKNHGVRHEKNGEDLLSFAWRNWREGTVTSIIDQALKNSSQNEMIRCIHIGLLCVEEDLNNRPTMANVALMLNSCSISLPVPKKPAFLIDSATESLPNMSWDDNSWATKSTQSTARSAQESVNEASITELYPR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00828 698 MobiDBLite consensus disorder prediction 665 691 - -
Viun5g00828 698 Gene3D - 25 126 IPR038408 -
Viun5g00828 698 Gene3D - 134 240 IPR038408 -
Viun5g00828 698 ProSiteProfiles Gnk2-homologous domain profile. 133 240 IPR002902 -
Viun5g00828 698 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Viun5g00828 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Viun5g00828 698 MobiDBLite consensus disorder prediction 665 698 - -
Viun5g00828 698 Gene3D Transferase(Phosphotransferase) domain 1 447 645 - -
Viun5g00828 698 ProSiteProfiles Protein kinase domain profile. 332 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00828 698 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 697 - -
Viun5g00828 698 SMART serkin_6 332 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00828 698 CDD STKc_IRAK 338 638 - -
Viun5g00828 698 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 127 - -
Viun5g00828 698 SUPERFAMILY Protein kinase-like (PK-like) 318 666 IPR011009 -
Viun5g00828 698 Gene3D Phosphorylase Kinase; domain 1 297 407 - -
Viun5g00828 698 FunFam Cysteine-rich receptor-like protein kinase 10 135 240 - -
Viun5g00828 698 FunFam Cysteine-rich receptor-like protein kinase 10 295 407 - -
Viun5g00828 698 Pfam Protein tyrosine and serine/threonine kinase 335 634 IPR001245 GO:0004672|GO:0006468
Viun5g00828 698 FunFam Cysteine-rich receptor-like protein kinase 28 442 645 - -
Viun5g00828 698 Pfam Salt stress response/antifungal 143 237 IPR002902 -
Viun5g00828 698 Pfam Salt stress response/antifungal 34 124 IPR002902 -
Viun5g00828 698 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00828 Viun-Chr5 5244619 5247653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00828 1 698 Receptor kinase-like Gene Family AT4G21410 44.918 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g00828 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00828 - - pvu:PHAVU_008G058700g 949.888