Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00823 ATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCGCCGTGTCGTCTTCTTCCTCCTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCCGAAGGTGTTTCCTCCTCCTCTTCTTCTTCTACCTTTTCTATCTTCAGAGGCGAACAAGGAAGCCAGGTTCTGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCCCCATTGAGGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTGCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCTCCCTTGTCCTCGCTCTCTTCCTATTCTTCTGCGCCTCCCAAAACGGTTTCATCTCAAGAGAAACAACACCAACAGCGAAACAAGCAGCCGCTCTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTGTGTCAAGTGCCTTTTGAAAATCTCTCCTCGGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGTTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACAATGTTCATAGTGACATACACTGCTGAGCACAACCACCCTGCTCCTACACACAGAAACTCTCTTGCTGGTTCCACACGCCAGAAGCCATTGGTACCTCAAACTGTCACAACCGAACAAGACTCTGAGAAGAGCAAGAGCCTCACAAAACCCTCTTCCCCTGCAACCTCAGGGGCAGAGGAAGAAACTCCAGCACAAGTGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGACGTGATGGATGATGAGGAAGAAGATGAGTTTGTTTTGTCTGACATGGTGCTGACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAACTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCTGCTACTGCAATCCCTTCTTGGGTGGCCAGTGCTGGTGGATGCATATGA 1026 0.5 MAEDWDLHAVVRGCSTVTSSAVSSSSSSSSGFASCYFHPEGVSSSSSSSTFSIFRGEQGSQVLSLSAYPFEARSPIEELHELCRPFFCKSQPLSLQASSPLSSLSSYSSAPPKTVSSQEKQHQQRNKQPLSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLVPQTVTTEQDSEKSKSLTKPSSPATSGAEEETPAQVEKSESREEKEDVMDDEEEDEFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSATAIPSWVASAGGCI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00823 341 MobiDBLite consensus disorder prediction 214 261 - -
Viun5g00823 341 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00823 341 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00823 341 MobiDBLite consensus disorder prediction 104 137 - -
Viun5g00823 341 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 310 IPR044810 GO:0003700
Viun5g00823 341 MobiDBLite consensus disorder prediction 211 287 - -
Viun5g00823 341 FunFam WRKY transcription factor 22 140 210 - -
Viun5g00823 341 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00823 341 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00823 341 Gene3D WRKY domain 140 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00823 341 MobiDBLite consensus disorder prediction 104 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00823 Viun-Chr5 5184180 5186153 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00823 1 322 WRKY Transcription Factor Family AT4G01250 48.476 1.05e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g00823 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00823 K13425 - gmx:100798084 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00823 5 5184180 5186153 Viun4g02032 4 36094580 36096592 ECH
Viun5g00823 5 5184180 5186153 Viun7g03187 7 34412245 34414573 ECH
Viun5g00823 5 5184180 5186153 Viun5g00823 5 5184180 5186153 ECH
Viun10g01982 10 34532272 34534076 Viun5g00823 5 5184180 5186153 ECH
Viun10g02618 10 39752376 39757458 Viun5g00823 5 5184180 5186153 ECH
Viun5g00823 5 5184180 5186153 Viun10g01982 10 34532272 34534076 PCT