Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00820 ATGGAAAACCATGATCCACCACCCCAAAACAACCCTTTTCTGTTCAACCCTTCGGAACAACCTCTAGAGCAAGGGCTATGTGACTTTGACTCGTGGGGTAACCTTTTCTCTGCCCAGAACAGCTTGTTGTTGCTTAATGGTGATGCCAAGGAAACTATTCAACGTGCTTCTGCTTCCTCTTCATCTTTAATGGCTCAAAATCAGGAGGAAAAGGGAAACAAGGAGAAAAGGAAAGGTGGGAGGGTGAAGAAAACAACACGAGTGCCGAGGTTTGCTTTTCAAACGAGAAGTGCAGATGATGTTTTGGATGATGGTTATCGCTGGAGGAAATATGGACAGAAATCTGTGAAGAACAGCACATATCCCAGAAGTTACTACCGGTGCACGCACCACACATGCAATGTGAAGAAACAAGTGCAGAGGCTGTCGAAAGACACGAGCATTGTGGTGACAACGTACGAGGGAATTCACAACCATCCATGCGAGAAGCTGATGGAAACTCTAACCCCTCTGCTGAAGCAAATACAGTTTCTTGCTAGCTTGTAA 546 0.456 MENHDPPPQNNPFLFNPSEQPLEQGLCDFDSWGNLFSAQNSLLLLNGDAKETIQRASASSSSLMAQNQEEKGNKEKRKGGRVKKTTRVPRFAFQTRSADDVLDDGYRWRKYGQKSVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00820 181 FunFam WRKY transcription factor 57 88 162 - -
Viun5g00820 181 SUPERFAMILY WRKY DNA-binding domain 95 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00820 181 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 163 IPR044810 GO:0003700
Viun5g00820 181 MobiDBLite consensus disorder prediction 55 87 - -
Viun5g00820 181 Pfam WRKY DNA -binding domain 103 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00820 181 Gene3D WRKY domain 87 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00820 181 ProSiteProfiles WRKY domain profile. 97 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00820 181 SMART WRKY_cls 102 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00820 Viun-Chr5 5164471 5165348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00820 75 181 WRKY Transcription Factor Family AT5G41570 74.766 2.02e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g00820 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00820 - - gmx:100796481 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00820 5 5164471 5165348 Viun10g02051 10 35476274 35478909 PCT