Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00805 ATGTCCCCTTCAATTCCCTCTCCTCACTTCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCTTTTCTCTTTCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGCGCCACCCGACACCGTACCCAAACAACCGCCGTCGTCACCGCCGCCGCCAATCCATCCGACGGCGTTGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGACAACGAGGAGGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTGATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGCCGTCATTTCTTCCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCCGTTTGCCGCAACTCCCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 561 0.6043 MSPSIPSPHFTHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAVVTAAANPSDGVVLPRVIFVAEDDNEEEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00805 186 SUPERFAMILY RING/U-box 114 162 - -
Viun5g00805 186 PANTHER RING-H2 FINGER PROTEIN ATL67 7 185 IPR044289 GO:0016567|GO:0016740
Viun5g00805 186 Pfam Ring finger domain 113 157 IPR001841 -
Viun5g00805 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Viun5g00805 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Viun5g00805 186 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00805 Viun-Chr5 5071853 5072874 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00805 1 176 C3H Transcription Factor Family AT5G07040 43.820 3.15e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00805 - - gmx:100793332 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00805 5 5071853 5072874 Viun5g00805 5 5071853 5072874 ECH