Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00803 ATGTCACTGTCTCCTTCTCCCTCCGTCTCCTTCTCCTACGGGCCATCCATGAACATGAACACCAACAACAATGGACTAGACATATTCACCAAGGTGTTCATGTTGCTCATTTTTTTCACTCTCTTCGTTCGTGTGTGTTACGTGTACATGAACACGCGAAGAGAACAACATGGCAACGACAACATAAACAATAGCATCGCATCCATGATCCACCATAACGATCAAAACGATAACCTCACGGGGATACCCTATGACGTCATCAAGTCCTACCACACTTTCCCTTACAGCAAAACCGACAGTGTGGTCGGAACAACGTGCGACCATGACACCACGTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGTTAAGGATGCTGCCGCAATGCCGCCACTACTTTCATCGTGACTGCGTTGACGCGTGGCTCAAGCTCAACGCCACGTGTCCCGTTTGTAGGAACTCGCTCATGGAAACTAGAACCAATAATAATATTGACGATAACAATGTTATTAACCATGGTGGCAATGCCTTGGAACGTGTATAA 549 0.4663 MSLSPSPSVSFSYGPSMNMNTNNNGLDIFTKVFMLLIFFTLFVRVCYVYMNTRREQHGNDNINNSIASMIHHNDQNDNLTGIPYDVIKSYHTFPYSKTDSVVGTTCDHDTTCAICIEDYEESEMLRMLPQCRHYFHRDCVDAWLKLNATCPVCRNSLMETRTNNNIDDNNVINHGGNALERV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00803 182 PANTHER RING-H2 FINGER PROTEIN ATL67 16 161 IPR044289 GO:0016567|GO:0016740
Viun5g00803 182 SMART ring_2 112 153 IPR001841 -
Viun5g00803 182 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Viun5g00803 182 SUPERFAMILY RING/U-box 111 163 - -
Viun5g00803 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 160 IPR013083 -
Viun5g00803 182 Pfam Ring finger domain 111 154 IPR001841 -
Viun5g00803 182 CDD RING-H2_PA-TM-RING 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00803 Viun-Chr5 5053480 5054028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00803 25 168 C3H Transcription Factor Family AT5G07040 29.452 4.16e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00803 - - vun:114182932 370.933