Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00802 ATGGAGCTTCCTCTTCACAATCTCAACATTCTCACCACAGTTCTGCTCCTATGCATGTTCCCTCACTCACTCAAGTGCCAACAAGCATACCTCAATGCCACTGTCTATGACTGTTCCGACAACCCTTCTGCACCAAAAGGATACCTTTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTACTTTTCAGGTCCAAACCTCCCTATGATAGTCCTGTCAGAATTGCATACCTTCTTGGCTCTGATGCATCTACCATATCCTCAATCAACAACATCTCAAGAACAGACAAGATTGCTTCCAACAAGACAATCATTGTTCCTGTCTTCTGTTCATGTTCAGGAAACATCTACCAGCACAACACACCTTACACTGCCAGCAAGAATGACACCTATTATCAGTTGGTAAAAGAAACCTTCCAAGGCCTCACTACCTGTCAGGCAATGATGGGTCAGAATTACTATGCAGCAACCAAAATTGCAATTGGTGCTGAGCTCACAGTTCCCTTGTTATGTGCTTGTCCAACAGAAAATCAGACAGCAAGAGGGGTCACCTCCTTGATGGTTTACTTGGTGAACTATGGTGACACTGTTGAGTCGATAGGATTGGCTTATGGTGTCGATGAACAAAGTGTGCTTGAGGCCAATGAGTTGGCTGTGTCACAGAGTGAAAACAGCATAATGGACCTCCTTTCCTTGACACCTCTTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACTCAGATAAATTCTATTGTAAATGTTATCAAGCACCAGATGGAAGCTCCAAGGGACCCTTCTGTGATGAATCTGATGGTCAGAAATTCCCTGCCAAGTTGGTAGCCGCTTTAGGAGCAGGAATTGGTGTAGGCTTTCTGTGTTTGTTTCTTTTGGGATACAAATCATACCAATACATACAGAAGAAGAGAGAAAGGATCCGAAAGGAAAACCTTTTCAGGCAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTGTGGGAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTTCAGAGAGCAACAGATAACTACAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCACAGTATACAAAGGAATGCTACCAGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAAGGAACCAGATAGAAACTTTTGTGAATGAAGTGGTGATTCTATCCCAGATCAACCACAGGAACATTGTCAAACTATTAGGTTGTTGTCTCGAGACAGAAACTCCTTTACTAGTTTATGAATTCATTCCAAATGGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTGTTCCCATTTTCCATAGAGACATCAAACCTACCAACGTTCTTTTAGACACCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTTCCACAAGATAAAACTCACTTGACCACTGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAGTATTTTCAGTCTAGTAAGTTTTCAGATAAAAGTGATGTGTATAGTTTTGGGGTAGTGCTGGTAGAGCTCATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCACAGTTTCTTTCTCTGATGAAGGATAACAAAGTCTATGAAATTTTAGATGAAAGGGTGGCTAAGGAAGCAATGAAAGATGACATTCTTGCCATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCTTTGGAATTAGAAGCATTGAGAAAGATGCAAAGTTCCTTAAAGATCAACCATGATCATGAGCACAAAACTAGTGATATGGTTCAAGAGTGCACAGAGGAAAGCATGTCACTGTCCTTACAACTAGAGTCTACATCCTTCTAG 2007 0.4205 MELPLHNLNILTTVLLLCMFPHSLKCQQAYLNATVYDCSDNPSAPKGYLCNGLQKSCTSFLLFRSKPPYDSPVRIAYLLGSDASTISSINNISRTDKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYYQLVKETFQGLTTCQAMMGQNYYAATKIAIGAELTVPLLCACPTENQTARGVTSLMVYLVNYGDTVESIGLAYGVDEQSVLEANELAVSQSENSIMDLLSLTPLLVPLIGKSCKENSDKFYCKCYQAPDGSSKGPFCDESDGQKFPAKLVAALGAGIGVGFLCLFLLGYKSYQYIQKKRERIRKENLFRQNGGYLLQEKLSSCGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASVPIFHRDIKPTNVLLDTNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAQFLSLMKDNKVYEILDERVAKEAMKDDILAIANLAMRCLRLNGKKRPTMKEVSLELEALRKMQSSLKINHDHEHKTSDMVQECTEESMSLSLQLESTSF 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00802 668 Pfam Protein tyrosine and serine/threonine kinase 358 623 IPR001245 GO:0004672|GO:0006468
Viun5g00802 668 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Viun5g00802 668 ProSiteProfiles Protein kinase domain profile. 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00802 668 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 131 638 IPR045274 GO:0007166
Viun5g00802 668 Gene3D Transferase(Phosphotransferase) domain 1 431 654 - -
Viun5g00802 668 SUPERFAMILY Protein kinase-like (PK-like) 339 625 IPR011009 -
Viun5g00802 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Viun5g00802 668 SMART serkin_6 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00802 668 FunFam Wall-associated receptor kinase 2 431 648 - -
Viun5g00802 668 CDD STKc_IRAK 361 628 - -
Viun5g00802 668 FunFam Wall-associated receptor kinase 2 326 430 - -
Viun5g00802 668 Pfam LysM domain 189 218 IPR018392 -
Viun5g00802 668 Gene3D Phosphorylase Kinase; domain 1 328 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00802 Viun-Chr5 5014674 5017400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00802 275 629 Receptor kinase-like Gene Family AT1G16130 57.821 6.47e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun5g00802 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00802 - - gmx:100795455 1181.39