Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00801 ATGAATACAATAGATCTTAAACAGCACTACCAAATTGAATTTGTCTTCTCCAGAGACAACAGGTTCATGGAGTTTCATCATCCATACCTTTACATTCTCTGCATAATTCTGTTCTTACACATGTTTCCTGAATCTGCTAACTCTCAGCAAGCATACCTCAACAGCACTGTCTATGACTGCTCTGAGAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCCAAATCTCCCTATGACAGCCCTGTAAGCATTGCCTATCTTCTTGGCTCTGAAGCATCTACAATAGCCTCAATGAACAACATCTCAAGAGATGACAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTATTCTGTTCATGTTCTGGAAATATATACCAGCATATCACACCTTACACTGCCACCAAGAATGACACCTACTTCAAGCTGGTTACAGAAATTTACCAAGGTCTCACCACCTGCCAGGCACTGATGGGTCAGAATTACTATGCCTCTGGTGGCATTAGAGTTGGTGCTGAGCTCACAGTTCCAGTAGTGTGTGCTTGTCCCACTGAAAATCAGACTGCAAGAGGGATCACTTCCTTGCTGGTTTACTCAGTGAAAAATGGTGATACTGTTAAGTCCATTGGAGAGGCTTATGGTGTTGACCAACAAAGTATGCTAGAGGCCAATGCGTTGTCAGTGCCATCAAGTGAAGATAACATCATAATCATCTATGCCACAACTCCTATCTTGGTTCCTCTCAGAGGGAAGAGTTGCAAAGAGGAGCCTAATAGTTTCTATTGTACTTGCTCCCAGGGAAGGGTTGGGGATGGAACCTTCATGGGGTTCCAATGTAATGAATCTGATGATACAAGTTTTCCTACCAAATTGGTTGCTTCCTTAGGTGTTGGAATAGGCGCAGGCTTTCTGTGTTTGTTTCTTTTGGGGTACAAATCATATCAATATATTCAGAAGAAGAGAGAAAGTATTCGGAAGGAAAGCTTATTCAGGAGAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATCTTGTGGGAATGGAGAAATGGCAAAGCTGTTTAAAGCTGAGGAGCTACAGAAAGCAACAGATAACTATAACAAGAGTAGATTTCTTGGTCAGGGTGGCTTTGGCACTGTGTATAAGGGAATGCTACCAGATGGAACCATAGTTGCTGTTAAAAGGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTGATTCTATCCCAGATCAACCACAGGAACATTGTCAAACTCTATGGCTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCAAATAGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTGTTCCCATTTTCCATAGAGACATCAAACCTTCCAACATACTTTTAGACAGCAATCTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAAACTCACTTGACCACTGCTGTAGGAGGAACTTTTGGCTACATTGACCCTGAATATTTTCAGTCTAGTCAGTTTTCAGATAAGAGTGATGTGTATAGTTTTGGAGTAGTGCTGGTAGAGCTCATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCACAGTTTCTTTCCCTGATGAAGGAGAACAAAGTTTATGAAATTTTAGATGGCAGGGTAGTTAAGGAAGCAAGGAAAGATGAGATTCTTGCAATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCATTGGAATTAGAGGCATTGAGAAAGGTGCAAAGTTCCTTAGAGATCAACCATGATCATGAGTACACAACTAGCGAGGCAGTTCAAGAAATCACAGATGAAAGCATGCCACTGTTCTTAGAACAAGACTCCACATCCTTTTAG 2079 0.4156 MNTIDLKQHYQIEFVFSRDNRFMEFHHPYLYILCIILFLHMFPESANSQQAYLNSTVYDCSENPSAPKGYLCNGLQKSCTSFLVFRSKSPYDSPVSIAYLLGSEASTIASMNNISRDDKIPSNKSIIVPVFCSCSGNIYQHITPYTATKNDTYFKLVTEIYQGLTTCQALMGQNYYASGGIRVGAELTVPVVCACPTENQTARGITSLLVYSVKNGDTVKSIGEAYGVDQQSMLEANALSVPSSEDNIIIIYATTPILVPLRGKSCKEEPNSFYCTCSQGRVGDGTFMGFQCNESDDTSFPTKLVASLGVGIGAGFLCLFLLGYKSYQYIQKKRESIRKESLFRRNGGYLLQEKLSSCGNGEMAKLFKAEELQKATDNYNKSRFLGQGGFGTVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHRNIVKLYGCCLETETPLLVYEFIPNRTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASVPIFHRDIKPSNILLDSNLSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAQFLSLMKENKVYEILDGRVVKEARKDEILAIANLAMRCLRLNGKKRPTMKEVSLELEALRKVQSSLEINHDHEYTTSEAVQEITDESMPLFLEQDSTSF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00801 692 SMART serkin_6 379 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00801 692 Gene3D Transferase(Phosphotransferase) domain 1 455 677 - -
Viun5g00801 692 CDD LysM 210 243 IPR018392 -
Viun5g00801 692 CDD STKc_IRAK 385 652 - -
Viun5g00801 692 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 145 658 IPR045274 GO:0007166
Viun5g00801 692 Coils Coil 642 662 - -
Viun5g00801 692 SMART LysM_2 144 190 IPR018392 -
Viun5g00801 692 SMART LysM_2 210 260 IPR018392 -
Viun5g00801 692 SMART LysM_2 90 129 IPR018392 -
Viun5g00801 692 SUPERFAMILY Protein kinase-like (PK-like) 364 649 IPR011009 -
Viun5g00801 692 FunFam Wall-associated receptor kinase 2 350 454 - -
Viun5g00801 692 ProSiteProfiles Protein kinase domain profile. 379 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00801 692 Gene3D LysM domain 197 268 IPR036779 -
Viun5g00801 692 FunFam Wall-associated receptor kinase 2 455 672 - -
Viun5g00801 692 Pfam Protein kinase domain 379 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00801 692 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Viun5g00801 692 Gene3D Phosphorylase Kinase; domain 1 351 454 - -
Viun5g00801 692 Pfam LysM domain 211 243 IPR018392 -
Viun5g00801 692 Pfam LysM domain 92 129 IPR018392 -
Viun5g00801 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00801 Viun-Chr5 5010949 5013610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00801 309 653 Receptor kinase-like Gene Family AT1G16130 59.366 8.49e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun5g00801 Pkinase 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00801 - - vun:114186184 1385.16