Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00782 ATGGTTTCCCTGTCAACCACCACCCCCTTTCTACCCTTCACTGCACAAAACGCTTCCACCAGAATCCCTCCTCCCAACGCCTTCCGTTACAGCAACCACCGTGATAGGGATCACAGGAAGGTTGTGTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCTATTAATTTCAATGGTTCGCACAAATCAGAACAGCTGAGCGCGGCGCGGGATCAGGATGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTACAAATCTTTCGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATTAAGCACGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCTCCGGATAAGGGGGAAGTTTACATTCGAGGAAAAAAGAGGGTTGGTTTAGTAAGCGATGATGATATATCTGGTCTTCGGATTGGATTAGTTTTCCAAAGTGCCGCACTCTTTGATTCTTTAAGTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCGAGCATGTCTGAGGACCAGATATCAGAGCTTGTAAAGGAAACCTTGGCTGCAGTTGGACTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATCTGTGACACCACAAAGGAATCAATTGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCTATAGCATCTACTGTTGTTGAGGATCTGATTCGCTCAGTGCATATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAACGATTGTTTGGGAAGGAATGACCCATGAATTTACAACTACAACAAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAAATATTAG 1038 0.4403 MVSLSTTTPFLPFTAQNASTRIPPPNAFRYSNHRDRDHRKVVCACIAPPQNFKSQDSSPINFNGSHKSEQLSAARDQDDDSDVLIECRDVYKSFGEKKILNGVSFKIKHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLSVRENVGFLLYEHSSMSEDQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGTIVWEGMTHEFTTTTNPIVQQFASGSLDGPIKY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00782 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Viun5g00782 345 Gene3D - 71 337 IPR027417 -
Viun5g00782 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 13 345 - -
Viun5g00782 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
Viun5g00782 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Viun5g00782 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Viun5g00782 345 SMART AAA_5 109 313 IPR003593 GO:0016887
Viun5g00782 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00782 Viun-Chr5 4900911 4905584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00782 84 314 Calmodulin-binding Proteins AT2G36910 29.218 3.37e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00782 - - vum:124836515 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00782 5 4900911 4905584 Viun5g00782 5 4900911 4905584 ECH