Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00772 ATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCTGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACCGGCCTTTGTAGGTTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAACTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATATTAGGCTATCCACTCCGCCCAAATGAGCCCGACTGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTGGTGTCCAATCTCCAACTACACCAGGTCAGCAGTCTTATGCAACAGGAATTACAAATTGGCCCAGTTCATCGTATATTCCTAGCCCACGTTGGCAAAGTCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTAGCTGGAGTGCATACAGTGGTCAAATGGGATCAGATAGTTCACAACAAACAATGGGAAATGGCCAAAGCTATGGAACCAATCGGCAAAGTGAACCAACAAATGCAGGATCCCAGGGAGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCCGATCAACCAGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATTGGCCTTCCTTTACGTCCTGGAGAGCCTCTTTGTGTCTTCTATTCACGGTATGGCATATGCAAATTTGGTCCAAGTTGCAAATTTGATCACCCAATGGGAGTCTTTACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGGCGGCGAATGTTAGGTTCTTCATCAGGAACTTCTGCATTAAATTTATCATCAGAAGTACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1227 0.4401 MWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPDCAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPGVQSPTTPGQQSYATGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPSWSAYSGQMGSDSSQQTMGNGQSYGTNRQSEPTNAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEVLVESGSANPRRLSLSETRQIPSGDDNIDEEG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00772 408 FunFam Zinc finger nuclease 2 19 96 - -
Viun5g00772 408 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g00772 408 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Viun5g00772 408 SUPERFAMILY CCCH zinc finger 25 48 IPR036855 GO:0046872
Viun5g00772 408 SUPERFAMILY CCCH zinc finger 69 94 IPR036855 GO:0046872
Viun5g00772 408 Gene3D - 96 145 - -
Viun5g00772 408 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Viun5g00772 408 MobiDBLite consensus disorder prediction 210 244 - -
Viun5g00772 408 Gene3D - 266 351 - -
Viun5g00772 408 Gene3D - 19 95 - -
Viun5g00772 408 SUPERFAMILY CCCH zinc finger 115 139 IPR036855 GO:0046872
Viun5g00772 408 PANTHER PROTEIN PHOSPHATASE RELATED 9 360 - -
Viun5g00772 408 MobiDBLite consensus disorder prediction 380 408 - -
Viun5g00772 408 SMART c3hfinal6 111 138 IPR000571 GO:0046872
Viun5g00772 408 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Viun5g00772 408 SMART c3hfinal6 20 47 IPR000571 GO:0046872
Viun5g00772 408 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Viun5g00772 408 SMART c3hfinal6 65 92 IPR000571 GO:0046872
Viun5g00772 408 ProSiteProfiles Zinc finger C3H1-type profile. 21 48 IPR000571 GO:0046872
Viun5g00772 408 ProSiteProfiles Zinc finger C3H1-type profile. 65 93 IPR000571 GO:0046872
Viun5g00772 408 MobiDBLite consensus disorder prediction 380 398 - -
Viun5g00772 408 ProSiteProfiles Zinc finger C3H1-type profile. 111 139 IPR000571 GO:0046872
Viun5g00772 408 SUPERFAMILY CCCH zinc finger 317 341 IPR036855 GO:0046872
Viun5g00772 408 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Viun5g00772 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 22 47 IPR000571 GO:0046872
Viun5g00772 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 341 IPR000571 GO:0046872
Viun5g00772 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Viun5g00772 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 68 92 IPR000571 GO:0046872
Viun5g00772 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 138 IPR000571 GO:0046872
Viun5g00772 408 FunFam CCCH type zinc finger protein 266 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00772 Viun-Chr5 4826559 4835549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00772 1 405 C2H2 Transcription Factor Family AT3G02830 62.044 4.37e-176 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun5g00772 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00772 - - gmx:100786261 843.188