Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00770 ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTTCCTCAAGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCTGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACCGGCCTTTGTAGGTTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAACTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATATTAGGCTATCCACTCCGCCCAAATGAGCCCGACTGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTGGTGTCCAATCTCCAACTACACCAGGTCAGCAGTCTTATGCAACAGGAATTACAAATTGGCCCAGTTCATCGTATATTCCTAGCCCACGTTGGCAAAGTCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTAGCTGGAGTGCATACAGTGGTCAAATGGGATCAGATAGTTCACAACAAACAATGGGAAATGGCCAAAGCTATGGAACCAATCGGCAAAGTGAACCAACAAATGCAGGATCCCAGGGAGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCCGATCAACCAGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATTGGCCTTCCTTTACGTCCTGGAGAGCCTCTTTGTGTCTTCTATTCACGGTATGGCATATGCAAATTTGGTCCAAGTTGCAAATTTGATCACCCAATGGGAGTCTTTACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGGCGGCGAATGTTAGGTTCTTCATCAGGAACTTCTGCATTAAATTTATCATCAGAAGTACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1281 0.445 MEFDAAIPVSREHLPQDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPDCAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPGVQSPTTPGQQSYATGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPSWSAYSGQMGSDSSQQTMGNGQSYGTNRQSEPTNAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEVLVESGSANPRRLSLSETRQIPSGDDNIDEEG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00770 426 SUPERFAMILY CCCH zinc finger 289 315 IPR036855 GO:0046872
Viun5g00770 426 MobiDBLite consensus disorder prediction 398 416 - -
Viun5g00770 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Viun5g00770 426 MobiDBLite consensus disorder prediction 398 426 - -
Viun5g00770 426 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Viun5g00770 426 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Viun5g00770 426 FunFam CCCH type zinc finger protein 284 369 - -
Viun5g00770 426 Gene3D - 114 164 - -
Viun5g00770 426 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Viun5g00770 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Viun5g00770 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Viun5g00770 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Viun5g00770 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Viun5g00770 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Viun5g00770 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Viun5g00770 426 Gene3D - 36 113 - -
Viun5g00770 426 Gene3D - 278 361 - -
Viun5g00770 426 SUPERFAMILY CCCH zinc finger 133 157 IPR036855 GO:0046872
Viun5g00770 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872
Viun5g00770 426 MobiDBLite consensus disorder prediction 228 262 - -
Viun5g00770 426 PANTHER PROTEIN PHOSPHATASE RELATED 26 378 - -
Viun5g00770 426 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Viun5g00770 426 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Viun5g00770 426 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Viun5g00770 426 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Viun5g00770 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Viun5g00770 426 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Viun5g00770 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Viun5g00770 426 FunFam Zinc finger nuclease 2 37 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00770 Viun-Chr5 4826300 4835549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00770 19 423 C2H2 Transcription Factor Family AT3G02830 62.044 5.25e-176 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun5g00770 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00770 - - gmx:100786261 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00770 5 4826300 4835549 Viun5g00770 5 4826300 4835549 ECH