Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00769 ATGATTGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCTGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACCGGCCTTTGTAGGTTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAACTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATATTAGGCTATCCACTCCGCCCAAATGAGCCCGACTGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTGGTGTCCAATCTCCAACTACACCAGGTCAGCAGTCTTATGCAACAGGAATTACAAATTGGCCCAGTTCATCGTATATTCCTAGCCCACGTTGGCAAAGTCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTAGCTGGAGTGCATACAGTGGTCAAATGGGATCAGATAGTTCACAACAAACAATGGGAAATGGCCAAAGCTATGGAACCAATCGGCAAAGTGAACCAACAAATGCAGGATCCCAGGGAGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCCGATCAACCAGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATTGGCCTTCCTTTACGTCCTGGAGAGCCTCTTTGTGTCTTCTATTCACGGTATGGCATATGCAAATTTGGTCCAAGTTGCAAATTTGATCACCCAATGGGAGTCTTTACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGGCGGCGAATGTTAGGTTCTTCATCAGGAACTTCTGCATTAAATTTATCATCAGAAGTACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1239 0.4391 MIDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPDCAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPGVQSPTTPGQQSYATGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPSWSAYSGQMGSDSSQQTMGNGQSYGTNRQSEPTNAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEVLVESGSANPRRLSLSETRQIPSGDDNIDEEG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00769 412 SUPERFAMILY CCCH zinc finger 275 301 IPR036855 GO:0046872
Viun5g00769 412 SUPERFAMILY CCCH zinc finger 119 143 IPR036855 GO:0046872
Viun5g00769 412 Gene3D - 101 150 - -
Viun5g00769 412 SUPERFAMILY CCCH zinc finger 73 98 IPR036855 GO:0046872
Viun5g00769 412 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Viun5g00769 412 PANTHER PROTEIN PHOSPHATASE RELATED 13 364 - -
Viun5g00769 412 SMART c3hfinal6 69 96 IPR000571 GO:0046872
Viun5g00769 412 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Viun5g00769 412 SMART c3hfinal6 115 142 IPR000571 GO:0046872
Viun5g00769 412 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Viun5g00769 412 SMART c3hfinal6 24 51 IPR000571 GO:0046872
Viun5g00769 412 MobiDBLite consensus disorder prediction 214 248 - -
Viun5g00769 412 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Viun5g00769 412 FunFam Zinc finger nuclease 2 23 100 - -
Viun5g00769 412 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Viun5g00769 412 ProSiteProfiles Zinc finger C3H1-type profile. 69 97 IPR000571 GO:0046872
Viun5g00769 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 118 142 IPR000571 GO:0046872
Viun5g00769 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Viun5g00769 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 345 IPR000571 GO:0046872
Viun5g00769 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 26 51 IPR000571 GO:0046872
Viun5g00769 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Viun5g00769 412 MobiDBLite consensus disorder prediction 384 412 - -
Viun5g00769 412 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Viun5g00769 412 Gene3D - 270 355 - -
Viun5g00769 412 Gene3D - 23 100 - -
Viun5g00769 412 MobiDBLite consensus disorder prediction 384 402 - -
Viun5g00769 412 FunFam CCCH type zinc finger protein 270 355 - -
Viun5g00769 412 SUPERFAMILY CCCH zinc finger 321 345 IPR036855 GO:0046872
Viun5g00769 412 ProSiteProfiles Zinc finger C3H1-type profile. 115 143 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00769 Viun-Chr5 4826137 4835549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00769 5 409 C2H2 Transcription Factor Family AT3G02830 62.044 3.70e-176 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun5g00769 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00769 - - gmx:100786261 847.04