Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00764 ATGTTGTGTTTTTTAATGTTTAGCGTGAAACTTAAATACGAGGTTGCGAATTGGTGCAGATACCTGTGCCCTGAGCCTTATCCTGAGGAAAATCTAGAGTTCCTTCGGTCGCAGAATATTCGGCTCTTTCAATTTGCAATTGAGGGGAAAACGGATATTTCTACCCCTATTCTGAAGGATTCTGTCATGGATGCACTGAAAGTTCTAATTGATGTGAGAAATCACCCTGTTTTGATCCACTGCAAGCGAGGAAAGCATAGAACTGGTTGCCTTGTTGGTTGCTTGCGAAAATTACAGAATTGGTGTTTGTCTTCTGTATTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCCAGGACAATGGACTTAACATTTATAGAAATGTTTGACATTCTAAGCCTGAGCCAGTGCCTTTACAGCATAATCTACCAGTACCATGGATATGGTTCAAAAAAGCGTCGGTTGTTGTACAAAGATGAGAATTTACAGAAGCCCCGATTGACATCATTTTAG 513 0.4055 MLCFLMFSVKLKYEVANWCRYLCPEPYPEENLEFLRSQNIRLFQFAIEGKTDISTPILKDSVMDALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRTMDLTFIEMFDILSLSQCLYSIIYQYHGYGSKKRRLLYKDENLQKPRLTSF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00764 170 PANTHER TYROSINE-PROTEIN PHOSPHATASE 19 140 - -
Viun5g00764 170 Gene3D Protein tyrosine phosphatase superfamily 10 133 IPR029021 -
Viun5g00764 170 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 21 131 IPR029021 -
Viun5g00764 170 Pfam Tyrosine phosphatase family 21 132 IPR004861 -
Viun5g00764 170 ProSitePatterns Tyrosine specific protein phosphatases active site. 79 89 IPR016130 GO:0016311|GO:0016791
Viun5g00764 170 PRINTS Plant and fungal dual specificity phosphatase signature 21 34 IPR020428 GO:0016791
Viun5g00764 170 PRINTS Plant and fungal dual specificity phosphatase signature 40 54 IPR020428 GO:0016791
Viun5g00764 170 PRINTS Plant and fungal dual specificity phosphatase signature 57 71 IPR020428 GO:0016791
Viun5g00764 170 FunFam Tyrosine phosphatase, putative 10 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00764 Viun-Chr5 4793191 4795928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00764 21 166 Protein tyrosine phosphatase (PTP) family AT3G02800 73.288 2.11e-81 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00764 K18045 - gmx:100785746 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00764 5 4793191 4795928 Viun5g00764 5 4793191 4795928 ECH