Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00754 ATGGAAAATCAAAACTTTCTATCACTCTTCATCATCCTCTTGTTGGCTCATTGGATCCATGTTCAAGCTGCTCCTCCTCAATCTCGCGTCACACAACTCCCTGGCTTCAACTCCAGTTTCCCATCCAACCACTATTCAGGATATATAAGTATTGATGGAGATTATAAGAGTGGGAAGAACCTGTTCTACTACTTCGTGAGTTCAGAGAGAAGTGCAGAGAAGGACCCAGTGGTGCTGTGGTTGAATGGTGGACCTGGGTGTTCAAGCTTCGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAAATCAAAAGAGAATCTACCCACTTTGCATATCAATCCTTACAGCTGGTCAAAGGTTTCCAACATTATATATTTGGATTCTCCTGCTGGTGTTGGACTCTCTTATTCCAAGAACACAAGCAAATATGTTACTGGGGACCTGCAAACTGCGTCTGATACCCATCTTTTCCTCTTAAAGTGGTTTCAGCAATTCCCAGAATTTCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTTCGCTGGAGTTTATGTCCCTACTCTGGCTTTTGAAGTGGCCAAAGGAATCCAGAGTGGTACAAAGCCCGTGATCAATTTTAAGGGTTACTTGGTTGGAAATGGTGTCACGGACGAAATATTTGATGGCAATGCTCTCATCCCATTTGTGCATGGGATGGGCCTCATATCCGACAGTATCTATGAGGATTTACAAGCTACATGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATCCGTGTTATAAGAGCATTGTTAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTAGAGCCATGCTACCATTTCCCTGACGAAGCCATAGAAAATGGAAGCTTACCAAAAAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTCCCTGTGAGGAAGAGAATGTTCGGAAGAGCATGGCCTTTTCGAGCACCAGTCAAACCTGGTCTTGTCACATTATGGCCTCAATTGTCTGAAACAACTCAAACGAGGCATGTCGCTTGTGTTAATGATGAAGTAGCAAGCTCATGGCTAAACAACGATGCTGTCAGAAAAGCCATTCATGCTGAATCGGAAAGTGTGGCGGGTGCATGGGAATTATGTACAGATAGGATAGAGTACTATCACAATGCTGGAAGCATGATTCCCTACCACAAGAACCTAACCAAGAGGGGTTACAAGGCACTTATTTTCAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACTCGATCTCTGGGATATAAGATTGTGGATGAATGGAGGCCATGGAACTTAAACGACCAAGTTGCTGGGTACTTGCAAGAGTACGAGAACAACCTCACATTCCTAACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGAATTTTTCAGCCATTGGTTGGAGGGAAAGAAAATATAA 1503 0.4371 MENQNFLSLFIILLLAHWIHVQAAPPQSRVTQLPGFNSSFPSNHYSGYISIDGDYKSGKNLFYYFVSSERSAEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKENLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYVTGDLQTASDTHLFLLKWFQQFPEFQANPFYIAGESFAGVYVPTLAFEVAKGIQSGTKPVINFKGYLVGNGVTDEIFDGNALIPFVHGMGLISDSIYEDLQATCKGNYYDAYSLDENDPCYKSIVKVDRAIDGLNVYNILEPCYHFPDEAIENGSLPKSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPQLSETTQTRHVACVNDEVASSWLNNDAVRKAIHAESESVAGAWELCTDRIEYYHNAGSMIPYHKNLTKRGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNLNDQVAGYLQEYENNLTFLTIKGAGHTVPEYKPREALEFFSHWLEGKKI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00754 500 Gene3D alpha/beta hydrolase 22 320 IPR029058 -
Viun5g00754 500 Pfam Serine carboxypeptidase 34 497 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 SUPERFAMILY alpha/beta-Hydrolases 30 498 IPR029058 -
Viun5g00754 500 FunFam Carboxypeptidase 355 499 - -
Viun5g00754 500 Gene3D - 353 500 - -
Viun5g00754 500 FunFam Carboxypeptidase 402 497 - -
Viun5g00754 500 FunFam Carboxypeptidase 23 310 - -
Viun5g00754 500 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 484 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 467 480 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Viun5g00754 500 ProSitePatterns Serine carboxypeptidases, histidine active site. 467 484 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00754 Viun-Chr5 4716214 4721433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00754 361 500 Calmodulin-binding Proteins AT2G22960 47.857 1.77e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00754 K16296 - gmx:100790895 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00754 5 4716214 4721433 Viun5g00754 5 4716214 4721433 ECH
Viun5g00754 5 4716214 4721433 Viun10g02058 10 35508003 35510315 PCT