Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00735 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTACTCAAGATCACTCTCAAACAGCACCTTCTCGTTTTGGCTTCAACCCTGGTGGAATCTCGAACACTGATGTTGCAGGAAACTGTTTTGATCTCACTTCTGACTCAACTCCTCATCTACTCAACCTTCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATGACATTCCCAACACCACTCAAGATTGGAAGGAGAACTACAACAGTCAAAACCTGCTGCTGGGAACTTCATGCAGTGACCAAAACATGAACAACAATCAACATCATCAACAGCAACAACAGCCAAAGCTTGAAAACTTCCTAGGAGGACATTCGTTCGGAGAACACGACCAAACCTACGGTGGTAACTCAGCCTCGACAGAATACATGTTTCCAACTCAGCCAGTGGCTGGAAATGGCGGCAGTAGCACAAGTAATAGTAACTCCATAGGGTTATCCATGATAAAAACATGGCTGAGGAACCAACCGGCACCCTCGGAAAACAACAACAACAACAATGAAAGTGGTGGGAACAGTGGAAATAGTGTGCAGACTCTTTCACTTTCTATGAGTACTGGTTCACAATCCAACACTTCACTTCCTGTTCTCTCTGCAAGTGTGGAAAATGGAAAGAGTTCTTCCGATAACAAACAACCACCACCAACCACTGCTGCACTTGATACCACCACCACCACCACCCCAACAGGAGCCACTGAATCTGCACCCAGAAAGTCCATTGACACCTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGGAGATACGAGGCTCATCTGTGGGATAATAGTTGCAGAAGAGAGGGACAAACCCGCAAAGGAAGACAAGTTTACTTGGGAGGCTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTCCCAATTAACCACTATGAGAAGGAGGTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGCAACAAGGATCTTTACTTGGGAACATTCAGCACTCAAGAAGAAGCAGCAGAGGCTTATGATGTCGCGGCCATCAAATTCCGAGGACTGAGTGCTGTTACGAACTTCGACATGAGCAGATACGATGTGAAGAGCATTCTCGAGAGCACTACTTTGCCGATTGGTGGTGCTGCAAAGCGTTTGAAGGACATGGAACAGGTGGAACTCAACGTGGAAGCTCATAGAACAGACCAAGAGGATCATAGCACGACCATCTTGAACTCTCACCTACCTCATGGTGGTATCAGTAACAATTTCGCAGGAACAACAGCAGCAGCAGCAACAAATCATCATAACTGGCACAGTGGTCTTTCGTTCCACCAACCTCAACCTTGCACCACCACCATGCACTACCCTTATGGACAGAGACTATGGTGCAAGCAAGAACAGCACGACAATTCTGATACCTCTCATCCTTTGTCTTACCCTGATATTCATCAACTGCAGCTAGGGAGTAACGGCACGCACAACTTTTTCCACACAAATTCTGTGTTGCACCCTATGATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCATCGAACTCGGTGGTTTACGATGGTTATGGAGGTGGTGGTGGGGGCTATGTGATGCCTCTGGGAACTGGTACTGTTGTTGCAAGTGAGGGTGATCACAGTAATCAAAGATTTGGTGATTATGAAAGTGTTTATGGATCTAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCTCAACAGCAATCAGGTTCTGTAGATCAAGGTTCTGCATGCAACACTTGGGTTCCAACTGGAATTCCAACTCTTGCACCTAGGTCTCTCTGCCATGGTGCTCCACCCTTCTCGTTATTGCATGAATAG 2061 0.4561 MGSMNLLGFSLSPQEHPSTQDHSQTAPSRFGFNPGGISNTDVAGNCFDLTSDSTPHLLNLPSYGIYEAFHRNNDIPNTTQDWKENYNSQNLLLGTSCSDQNMNNNQHHQQQQQPKLENFLGGHSFGEHDQTYGGNSASTEYMFPTQPVAGNGGSSTSNSNSIGLSMIKTWLRNQPAPSENNNNNNESGGNSGNSVQTLSLSMSTGSQSNTSLPVLSASVENGKSSSDNKQPPPTTAALDTTTTTTPTGATESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPINHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEAHRTDQEDHSTTILNSHLPHGGISNNFAGTTAAAATNHHNWHSGLSFHQPQPCTTTMHYPYGQRLWCKQEQHDNSDTSHPLSYPDIHQLQLGSNGTHNFFHTNSVLHPMMNMDSASIDNSSSSNSVVYDGYGGGGGGYVMPLGTGTVVASEGDHSNQRFGDYESVYGSNDAYHAHARNLYYLSQQQSGSVDQGSACNTWVPTGIPTLAPRSLCHGAPPFSLLHE 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00735 686 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 514 - -
Viun5g00735 686 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 Pfam AP2 domain 369 419 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 SUPERFAMILY DNA-binding domain 368 429 IPR016177 GO:0003677
Viun5g00735 686 MobiDBLite consensus disorder prediction 173 260 - -
Viun5g00735 686 FunFam AP2-like ethylene-responsive transcription factor ANT 266 335 - -
Viun5g00735 686 PRINTS Ethylene responsive element binding protein signature 409 429 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 ProSiteProfiles AP2/ERF domain profile. 369 427 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 CDD AP2 368 429 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
Viun5g00735 686 MobiDBLite consensus disorder prediction 119 161 - -
Viun5g00735 686 CDD AP2 266 335 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 FunFam AP2-like ethylene-responsive transcription factor 368 429 - -
Viun5g00735 686 Gene3D AP2/ERF domain 369 429 IPR036955 GO:0003700|GO:0006355
Viun5g00735 686 Gene3D AP2/ERF domain 267 335 IPR036955 GO:0003700|GO:0006355
Viun5g00735 686 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 SMART rav1_2 369 433 IPR001471 GO:0003700|GO:0006355
Viun5g00735 686 MobiDBLite consensus disorder prediction 1 35 - -
Viun5g00735 686 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00735 Viun-Chr5 4590372 4594809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00735 114 454 AP2-EREBP Transcription Factor Family AT5G17430 63.343 1.82e-138 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun5g00735 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00735 K09285 - gmx:100797584 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00735 5 4590372 4594809 Viun5g00735 5 4590372 4594809 ECH