Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00722 ATGGAAGATTCATTGGAGAATTGGATTTCCAATCTGTTGTCACAGGAAATGGAAGACTATGATGCTGTGTTGAGTGAGAGCAATGTTTCATTTGATGAGCAACAGTTTCTGAGAGAGATTCTTGAGGAGCCACAGAATCTGAGTCCCAGCAACAGCAGTGTGTCATTTGATGAGGCAATTGGTGACACTCTGCACAAAAGCTACAGTTCAAACTCCATCAAGTCTTTGAAAACATCATCATCATCATATGGCTCTGCAGCCACCAGATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCACAGATCATAAGCATGGTTCATCAGTGCAGGGATGTTGCAGTAAAAAAAGGGGTGGTGGTGCTGTGGTGAAAGATGGAGCTGAGTTTGAAGCAGTTATGGCTCAGCCAAGAAAGAGGGTTAGAAGGTCTTGTGAGACACAGCATCACATCATGGCTGAGAGGAAAAGGAGACAGGAACTCACGGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTATGTACTTCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGAGTGAAAGAGTTGGAAAATCAAAACAGTGAGAAAAAAGTAGTACATCATTCATCAACGTTGGTAACAAAATCTCAAGTCTCCTCCTCAAACAAAAGCAGTGAAACCAACAAAGAATCACTGTTCGAGGTTGAAGCAAGAGTCCTAGACGAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAACATACTTGCTTTTCTTGAAAAGCTTCATCTTTCCCCAACCAGTAGCAGTGTATTACCATTCGGCACTTCTACTCTTATAATCCACATCATTTCCCAGATGGATGAGGAATGCAGAATGAACATGGATGAGCTAGTGAAGAATATGAGAGAATATCTGTTGGATGTGTATGACATGCAACAGTGA 978 0.4243 MEDSLENWISNLLSQEMEDYDAVLSESNVSFDEQQFLREILEEPQNLSPSNSSVSFDEAIGDTLHKSYSSNSIKSLKTSSSSYGSAATRYLLSFDTSTAEPITDHKHGSSVQGCCSKKRGGGAVVKDGAEFEAVMAQPRKRVRRSCETQHHIMAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENQNSEKKVVHHSSTLVTKSQVSSSNKSSETNKESLFEVEARVLDEEVLIGIHCEKQKDIVCNILAFLEKLHLSPTSSSVLPFGTSTLIIHIISQMDEECRMNMDELVKNMREYLLDVYDMQQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00722 325 Coils Coil 185 212 - -
Viun5g00722 325 PANTHER BHLH TRANSCRIPTION FACTOR 3 317 - -
Viun5g00722 325 MobiDBLite consensus disorder prediction 211 233 - -
Viun5g00722 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 213 IPR036638 GO:0046983
Viun5g00722 325 Gene3D - 137 211 IPR036638 GO:0046983
Viun5g00722 325 MobiDBLite consensus disorder prediction 202 233 - -
Viun5g00722 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Viun5g00722 325 SMART finulus 152 201 IPR011598 GO:0046983
Viun5g00722 325 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00722 Viun-Chr5 4468124 4471809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00722 149 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 43.085 5.05e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g00722 HLH 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00722 - - gmx:100818334 353.599