Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00721 ATGGAAGATTCATTGGAGAATTGGATTTCCAATCTGGAAATGGAAGACTATGATGCTGTGTTGAGTGAGAGCAATGTTTCATTTGATGAGCAACAGTTTCTGAGAGAGATTCTTGAGGAGCCACAGAATCTGAGTCCCAGCAACAGCAGTGTGTCATTTGATGAGGCAATTGGTGACACTCTGCACAAAAGCTACAGTTCAAACTCCATCAAGTCTTTGAAAACATCATCATCATCATATGGCTCTGCAGCCACCAGATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCACAGATCATAAGCATGGTTCATCAGTGCAGGGATGTTGCAGTAAAAAAAGGGGTGGTGGTGCTGTGGTGAAAGATGGAGCTGAGTTTGAAGCAGTTATGGCTCAGCCAAGAAAGAGGGTTAGAAGGTCTTGTGAGACACAGCATCACATCATGGCTGAGAGGAAAAGGAGACAGGAACTCACGGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTATGTACTTCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGAGTGAAAGAGTTGGAAAATCAAAACAGTGAGAAAAAAGTAGTACATCATTCATCAACGTTGGTAACAAAATCTCAAGTCTCCTCCTCAAACAAAAGCAGTGAAACCAACAAAGAATCACTGTTCGAGGTTGAAGCAAGAGTCCTAGACGAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAACATACTTGCTTTTCTTGAAAAGCTTCATCTTTCCCCAACCAGTAGCAGTGTATTACCATTCGGCACTTCTACTCTTATAATCCACATCATTTCCCAGATGGATGAGGAATGCAGAATGAACATGGATGAGCTAGTGAAGAATATGAGAGAATATCTGTTGGATGTGTATGACATGCAACAGTGA 969 0.4241 MEDSLENWISNLEMEDYDAVLSESNVSFDEQQFLREILEEPQNLSPSNSSVSFDEAIGDTLHKSYSSNSIKSLKTSSSSYGSAATRYLLSFDTSTAEPITDHKHGSSVQGCCSKKRGGGAVVKDGAEFEAVMAQPRKRVRRSCETQHHIMAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENQNSEKKVVHHSSTLVTKSQVSSSNKSSETNKESLFEVEARVLDEEVLIGIHCEKQKDIVCNILAFLEKLHLSPTSSSVLPFGTSTLIIHIISQMDEECRMNMDELVKNMREYLLDVYDMQQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00721 322 Gene3D - 134 208 IPR036638 GO:0046983
Viun5g00721 322 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Viun5g00721 322 SMART finulus 149 198 IPR011598 GO:0046983
Viun5g00721 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 210 IPR036638 GO:0046983
Viun5g00721 322 Coils Coil 182 209 - -
Viun5g00721 322 PANTHER BHLH TRANSCRIPTION FACTOR 23 314 - -
Viun5g00721 322 MobiDBLite consensus disorder prediction 208 230 - -
Viun5g00721 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Viun5g00721 322 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00721 Viun-Chr5 4468124 4471815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00721 146 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 43.085 4.59e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g00721 HLH 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00721 - - gmx:100818334 358.992