Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00719 ATGGTTGAGGGTAGCCAAGTTTTCAGCTCTCATGTTATTGTTAGTTTCTTTCTGCTGGTTTTCTGTGGCATGGTTTGTGGGACTGACAGTGATATATTCTGCTTGCAAAGTGTAAAGCGTGAACTTCAGGACCCTTTCAATTATTTAAAATCCTGGGAATTCAACAACAAAACAGAAGGGTATATATGCAAGTTCACTGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTAAAACTGTCGAACATGGGACTCAAGGGTGAGTTTCCACGCGGCATTAAGAACTGCTCAAGCATGACAGGATTAGATTTTTCACTTAACAGACTCTCTAACACCATTCCAGCAGATGTATCCACACTTCTTACATTTGTGACATCCATTGATCTTTCCTCAAATGATTTTACTGGGGAAATACCTGCTTCCCTCTCAAACTGTACCTATCTTAATACTCTCAGACTTGACCAAAACCAACTCTCTGGTCAAATCCCTGCAAACTTGAGCCAGCTTCCGCGGCTTAAGGCTTTTAGTGTTTCCAATAATCTTTTGACAGGGCCGGTTCCAGCCTTTAAAGCAGGTGTTGCTGATGCAACAAGTTATGCAAATAATTCTGACCTGTGTGGTGGTCCTCTGGATGTTTGCCATGCCAAGTCTGCAAAGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACAGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTATGTGCGCCGTATTTCTTATAGGAAGAAGGAGGAGGATCCTGAAGGAAACAAGTGGGCAAGAAGTCTGAAGGGAACCAAAACAATAAAGGTTTCTATGTTTGAGAAGGAAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCAACTAATAACTTCAGTAATAGCAATATTATTGGGTCTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTCCTGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAATTTATGTCTGAGATGGCTATACTAGGGACTGTCAAACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGTCTGGCTAAAAGGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTAACCTCCATGATCAACTTCATCCTGATGCAGGCGTGTGCACCATGGATTGGACTGTAAGGCTCAAAGTTGCAATTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAATCCCCGTATTCTCCATCGGAACATAAGCTCTAAGTGCATCTTGTTGGACGCTGATTTTGAGCCCAAAATTTCTGATTTTGGTCTTGCTAGATTGATGAACCCAATTGATACACATCTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTGGGTTATGTTGCTCCTGAATATACAAAAACTTTGGTAGCCACTCCTAAAGGGGATATTTATAGCTTTGGGACCGTGCTTCTTGAGCTGGTGACAGGTGAAAGACCTACTCATGTGGCTAAAGCTCCAGAAACTTTCAAGGGAAATTTGGTTGAATGGATTTCACAGCAATCTAGCAATGCAAAACTCCATGCTGTCATTGATGAATCATTACTTGGGAATGGAGTAGACCAGGAAATTTTCCAATTTCTGAAGGTTGCATGCAATTGTGTCTCAGAAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGCTTGAATTATAATTTCACAGTTGAGGATGAGATAATGCTGTCTGTAGACTCTGATGCCGCTGAGAACTTAGAAGAACTTATTGTAGCTCGAGAGGGACATAACTGA 1845 0.4206 MVEGSQVFSSHVIVSFFLLVFCGMVCGTDSDIFCLQSVKRELQDPFNYLKSWEFNNKTEGYICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIKNCSSMTGLDFSLNRLSNTIPADVSTLLTFVTSIDLSSNDFTGEIPASLSNCTYLNTLRLDQNQLSGQIPANLSQLPRLKAFSVSNNLLTGPVPAFKAGVADATSYANNSDLCGGPLDVCHAKSAKSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKEISKMNLNDLMKATNNFSNSNIIGSGRSGTVYKAVLPDGTSLMVKRLQESQHSEKEFMSEMAILGTVKHRNLVPLLGFCLAKRERLLVYKNMPNGNLHDQLHPDAGVCTMDWTVRLKVAIGAAKGLAWLHHSCNPRILHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDIYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWISQQSSNAKLHAVIDESLLGNGVDQEIFQFLKVACNCVSEMPKERPTMFEVYQLLRAIGLNYNFTVEDEIMLSVDSDAAENLEELIVAREGHN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00719 614 ProSiteProfiles Protein kinase domain profile. 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00719 614 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 78 578 - -
Viun5g00719 614 CDD STKc_IRAK 308 576 - -
Viun5g00719 614 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 377 588 - -
Viun5g00719 614 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Viun5g00719 614 FunFam Leucine-rich repeat receptor-like protein kinase 28 191 - -
Viun5g00719 614 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Viun5g00719 614 Gene3D Transferase(Phosphotransferase) domain 1 377 596 - -
Viun5g00719 614 Gene3D Ribonuclease Inhibitor 29 217 IPR032675 -
Viun5g00719 614 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Viun5g00719 614 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Viun5g00719 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 376 - -
Viun5g00719 614 SUPERFAMILY L domain-like 29 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00719 Viun-Chr5 4447044 4450018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00719 18 590 Receptor kinase-like Gene Family AT3G28450 45.596 5.12e-180 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Viun5g00719 PK_Tyr_Ser-Thr 8.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00719 - - gmx:100817267 1055.05