LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g00710	ATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTGTTCATCATCGCCTTCAACGCCCGGACCTTGAAGACGATGACAACCAACACGACCAAGACGACACCAACAACAACGTTAACGATCACGAAGGGCTTGACCTAGTTGCCACAAATCAAGGTCATCCCGGTGATATTGTCGCTCGCAGGCCAAGAGGAAGACCTCCCGGTTCAAAGAACAAGCCCAAGCCACCTGTTATCATCACCAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCACCACTGGCTGTGATGTCTTTGACTCCGTCGCTACCTACGCAAGGAAGCGCCAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTCACGCTCCGCCAGCCCGCCGCAGCCGGCGCCGTTGTCACGCTTCACGGAAGGTTCGAGATCCTCTCTTTGTCGGGATCATTCCTCCCACCTCCTGCTCCGCCGGGTGCCACCAGTTTGACCGTCTTTCTCGGCGGAGGACAGGGCCAGGTTGTGGGTGGAAACGTTGTTGGCCCCTTGGTGGCTTCTGGGCCTGTTATTGTCATTGCTTCATCTTTTACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAGTCATCCGGCGGTGGTGGTGGCGGTGGCGGTGGTAGCGGTGGTGGTGGTGGTGGAGTGAGTAATAACTCTTTTCCTGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCCGGTGGAAGACAATCTTACTGA	840	0.5417	MAGIDLGSASHFVHHRLQRPDLEDDDNQHDQDDTNNNVNDHEGLDLVATNQGHPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTTGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSGGGGGGGGGSGGGGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY	279

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g00710	279	MobiDBLite	consensus disorder prediction	19	39	-	-
	Viun5g00710	279	CDD	DUF296	88	163	IPR005175	-
	Viun5g00710	279	ProSiteProfiles	PPC domain profile profile.	84	221	IPR005175	-
	Viun5g00710	279	MobiDBLite	consensus disorder prediction	19	77	-	-
	Viun5g00710	279	Pfam	Plants and Prokaryotes Conserved (PCC) domain	88	201	IPR005175	-
	Viun5g00710	279	MobiDBLite	consensus disorder prediction	212	257	-	-
	Viun5g00710	279	Gene3D	-	87	221	-	-
	Viun5g00710	279	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	28	237	IPR014476	GO:0003680
	Viun5g00710	279	FunFam	AT-hook motif nuclear-localized protein	87	214	-	-
	Viun5g00710	279	SUPERFAMILY	AF0104/ALDC/Ptd012-like	84	217	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g00710	Viun-Chr5	4399731	4401834	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g00710	1	276	AT-hook Motif Nuclear Localized (AHL) Family	AT4G17800	64.784	4.08e-101	295

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g00710	-		-	vra:106758954	445.277

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