Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00710 ATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTGTTCATCATCGCCTTCAACGCCCGGACCTTGAAGACGATGACAACCAACACGACCAAGACGACACCAACAACAACGTTAACGATCACGAAGGGCTTGACCTAGTTGCCACAAATCAAGGTCATCCCGGTGATATTGTCGCTCGCAGGCCAAGAGGAAGACCTCCCGGTTCAAAGAACAAGCCCAAGCCACCTGTTATCATCACCAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCACCACTGGCTGTGATGTCTTTGACTCCGTCGCTACCTACGCAAGGAAGCGCCAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTCACGCTCCGCCAGCCCGCCGCAGCCGGCGCCGTTGTCACGCTTCACGGAAGGTTCGAGATCCTCTCTTTGTCGGGATCATTCCTCCCACCTCCTGCTCCGCCGGGTGCCACCAGTTTGACCGTCTTTCTCGGCGGAGGACAGGGCCAGGTTGTGGGTGGAAACGTTGTTGGCCCCTTGGTGGCTTCTGGGCCTGTTATTGTCATTGCTTCATCTTTTACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAGTCATCCGGCGGTGGTGGTGGCGGTGGCGGTGGTAGCGGTGGTGGTGGTGGTGGAGTGAGTAATAACTCTTTTCCTGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCCGGTGGAAGACAATCTTACTGA 840 0.5417 MAGIDLGSASHFVHHRLQRPDLEDDDNQHDQDDTNNNVNDHEGLDLVATNQGHPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTTGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSGGGGGGGGGSGGGGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00710 279 MobiDBLite consensus disorder prediction 19 39 - -
Viun5g00710 279 CDD DUF296 88 163 IPR005175 -
Viun5g00710 279 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Viun5g00710 279 MobiDBLite consensus disorder prediction 19 77 - -
Viun5g00710 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 201 IPR005175 -
Viun5g00710 279 MobiDBLite consensus disorder prediction 212 257 - -
Viun5g00710 279 Gene3D - 87 221 - -
Viun5g00710 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 237 IPR014476 GO:0003680
Viun5g00710 279 FunFam AT-hook motif nuclear-localized protein 87 214 - -
Viun5g00710 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00710 Viun-Chr5 4399731 4401834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00710 1 276 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.784 4.08e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00710 - - vra:106758954 445.277