Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00700 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCTGCGGCGAAGAGGGTGTCGAGAGGATCTTTGAAGGCTGCACCTGAGAACCCGGGTGAGCCTGAAACTGCCGAAGCGGGGGCGAAAAATCATGCAGAAAATTCAGCTGTTGATGTTGGAGGGGAAGAAAAACACGTTGACGTGGACCAAGAGCCTCCGGAAGCTAGAAATGGGTCGGCTACGGTGGAAAACAATGAAGAAGAAGTTAAGGAGTCTATAGATGAATATGAAAAAGGTGAACATCTAGATTTAGAGGATAATTATCCTGAGTATGAAGCAGAAGAGTATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAAGTAGAGGAAGAACCTGAAGAGATTATAGGTGACGAGGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGTGAACATGCTGGTGAGGAGCATGAGCATGCCCAGGTGCCTGACGTGGAGGAAGAGGAACACCGCGAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTAGGGGGACTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGTTGATGATAAATCCCCAGACTAGAAGAAACAAGGGATTTGCATTTTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTTGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCATACAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGATTCCTTTATTGATCTGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCGTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAAGAACATGCCAGCTGCTCGCAGGAAGAACTATGGATTTGTTACATTTAGTACGCATGCTGCTGCTGTGGAATGTTCTGATAGCATAACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTATCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGGAAACATAATAACCATGGAGATTTTCGTTCTGGTCGCAACTCTGGAAGATTGGCAAGACCTTCACGGGGTCGACCTGCTCCACGTAGTTATCCTACCCGCGTGGTTAGAGGCATTGGAAGTCGTGCTCCACCAGTTAGACCTGTTAGTGTGAGAAGTAGACGTCCTGTCCCATCCATGCTAGATAGAGTCAGGCCAGTTGCTCCTCCAGCTAGAACCTTTGAAAGGAGATTGACTGCTCCTGCATATCCAAAAAGTGGCATGAAAAGAGACTATAGTAGACGTGAGGATCTACCGCCCCCAAGAAGCAGAGTTGCTGCAAATTATGGCTCTAGGGTAGCTTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTACCCCGAGCTACATAGAAGTACGTCTCGTGCTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTTCCCATCTAAGTTATCGTGAAGGACGCCCCCGTGACTATGAAACTATAGCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGATACCGGTGCTCACCAATCAAGATCCCGTTTAGATTATGAATATGGAGGTAGTACTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAACTTCCATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGACAGGGCATGAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGATTACGAATCCCGTGGAAGTGATGGTGGTGGCCGCTCATATTCATCCATGTATTCTGGTAGAGGTGTGGGTGGTGGTGGCAGCAGTTATATGGGTGGTGGTGGCTCTGGGTCTTATTATTGA 2328 0.4485 MPPRVVKRGAAAKRVSRGSLKAAPENPGEPETAEAGAKNHAENSAVDVGGEEKHVDVDQEPPEARNGSATVENNEEEVKESIDEYEKGEHLDLEDNYPEYEAEEYGGVDYDEKEIEQDEGQDEADEVEEEPEEIIGDEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHAQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMSQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELAKNMPAARRKNYGFVTFSTHAAAVECSDSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHNNHGDFRSGRNSGRLARPSRGRPAPRSYPTRVVRGIGSRAPPVRPVSVRSRRPVPSMLDRVRPVAPPARTFERRLTAPAYPKSGMKRDYSRREDLPPPRSRVAANYGSRVASQRHTSYRDYPARGSDYPELHRSTSRAAPKRGYVDDGYGQRFERPPPSHLSYREGRPRDYETIAGSKRPYTAIDDVPPRYDTGAHQSRSRLDYEYGGSTSQYGDAYGDRLGRSSLGYSGSRTSISNQELHGTYGSRQGMSYGGGSFGGSDGGMYTSSYGGDYESRGSDGGGRSYSSMYSGRGVGGGGSSYMGGGGSGSYY 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00700 775 MobiDBLite consensus disorder prediction 45 61 - -
Viun5g00700 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 452 IPR000504 GO:0003723
Viun5g00700 775 MobiDBLite consensus disorder prediction 589 604 - -
Viun5g00700 775 Gene3D - 273 356 IPR012677 -
Viun5g00700 775 FunFam RNA recognition water-stress protein1 360 485 - -
Viun5g00700 775 CDD RRM_SF 372 427 - -
Viun5g00700 775 MobiDBLite consensus disorder prediction 542 629 - -
Viun5g00700 775 CDD RRM_SF 195 266 - -
Viun5g00700 775 MobiDBLite consensus disorder prediction 1 181 - -
Viun5g00700 775 MobiDBLite consensus disorder prediction 163 181 - -
Viun5g00700 775 FunFam Heterogeneous nuclear ribonucleoprotein Q 274 356 - -
Viun5g00700 775 SUPERFAMILY RNA-binding domain, RBD 272 428 IPR035979 GO:0003676
Viun5g00700 775 SUPERFAMILY RNA-binding domain, RBD 188 271 IPR035979 GO:0003676
Viun5g00700 775 MobiDBLite consensus disorder prediction 732 775 - -
Viun5g00700 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Viun5g00700 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 357 IPR000504 GO:0003723
Viun5g00700 775 MobiDBLite consensus disorder prediction 433 513 - -
Viun5g00700 775 MobiDBLite consensus disorder prediction 96 162 - -
Viun5g00700 775 SMART rrm1_1 274 353 IPR000504 GO:0003723
Viun5g00700 775 SMART rrm1_1 194 267 IPR000504 GO:0003723
Viun5g00700 775 SMART rrm1_1 371 446 IPR000504 GO:0003723
Viun5g00700 775 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 273 - -
Viun5g00700 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 428 IPR000504 GO:0003723
Viun5g00700 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 341 IPR000504 GO:0003723
Viun5g00700 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Viun5g00700 775 Coils Coil 110 130 - -
Viun5g00700 775 Gene3D - 360 485 IPR012677 -
Viun5g00700 775 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 41 775 - -
Viun5g00700 775 MobiDBLite consensus disorder prediction 70 95 - -
Viun5g00700 775 Gene3D - 139 267 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00700 Viun-Chr5 4331235 4337601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00700 188 456 Eukaryotic Initiation Factors Gene Family AT1G49760 23.856 6.62e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00700 - - gmx:100811387 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00226 10 1671539 1678285 Viun5g00700 5 4331235 4337601 PCT