Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00684 ATGCTTCTCTGTTACTCTCTTCATCTCCCAATTGTATCTTCTTACTCACACAAATCAACCCGCGTTCCCAACACCAGCGGTTACATAAAGTTCCAAACCAGGTACCGCGAAAACCTGCGATACCTTCGAACGTTGACCATAATCGACCCCAAAACCAAACCGGAGGACCTCCCTCTCCCGAACGATGTCGACCACATCATCCGCACTCTCACGTTCCTAAAGTCACGCTCCTTCTCCGACGCCGACATCCCCCGCCTCAACTACCTCACCCCTGAGCTCTTCACTACCGCCGTCGTCCCCTCCGACTTCGCCGCCGTGTTCTCCTTCCTGGCCGACGAACTCCCGGCCACCGCGTCGGAGTCTCGCTATCTCATCCTCCGATGCCCCAGGCTGCTCTTCTCCCACGTCGACCTCTGCCTCCGCCCCACGCTCCAATTTCTCCGCCAGATCGGCATCCAGGGGCTGAACAAGCCCACGACGCGGAACGCGCACTTACTGAACACGCGGGTGCATAAACTACATGCGAAGGTTCAGTTCTTGCAGGAATTAGGGTTTCAGTACGAGGAGGCACTGAAAGCATGTGCGAGGTTGCCGGCCCTTTTTGGGTATGACGTGGGGAACAATCTATGGCCGAAGTATGTGTATCTTGTGAAGGAAATGGAGAGGGATTTGGAGGAGTTGAAGAAGTTTCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAGGAGAGGGGTGTTAGGATTCCCTTGAACAGAATGTTGATGTGGGGTGATGAAAAGTTCTACAACAACTGGAAGTGA 825 0.5358 MLLCYSLHLPIVSSYSHKSTRVPNTSGYIKFQTRYRENLRYLRTLTIIDPKTKPEDLPLPNDVDHIIRTLTFLKSRSFSDADIPRLNYLTPELFTTAVVPSDFAAVFSFLADELPATASESRYLILRCPRLLFSHVDLCLRPTLQFLRQIGIQGLNKPTTRNAHLLNTRVHKLHAKVQFLQELGFQYEEALKACARLPALFGYDVGNNLWPKYVYLVKEMERDLEELKKFPQYFGFSLKERIVPRHLHLKERGVRIPLNRMLMWGDEKFYNNWK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00684 274 Pfam mTERF 162 269 IPR003690 GO:0003690|GO:0006355
Viun5g00684 274 Gene3D Transcription termination factor 3, mitochondrial 56 274 IPR038538 -
Viun5g00684 274 PANTHER CGI-12 PROTEIN-RELATED 62 272 IPR003690 GO:0003690|GO:0006355
Viun5g00684 274 SMART mt_12 156 186 IPR003690 GO:0003690|GO:0006355
Viun5g00684 274 SMART mt_12 191 223 IPR003690 GO:0003690|GO:0006355
Viun5g00684 274 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Viun5g00684 274 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00684 Viun-Chr5 4290595 4291884 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun5g00684 mTERF 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00684 K15032 - gmx:100812333 490.345