Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00677 ATGGAATGCACGTTTGAAAGGGAAAACTCTATGCTGCTTCTGTTTCTTTGTGTCTTTCTAACGTTGTCGGGGCCCCAAGCTGCTGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACGCAGCTTTGACAACCATAGCCAAACTCTGTTGCCAACATGGAGAGGTAATAATCCATGCACATGGGAAGGAATTCAGTGTGACAAATCTAACTCTGTGTCCATCATAAATCTTTCTAGTTATGGACTTAAAGGTACACTCCACACTCTTAGCTTCTCCATTTTTTCTAACCTTCTCAGCCTCAATATCTACCAAAACTCCTTTCATGGAACCATTCCCCCACAGATTGGTAACATAACAAAAGTAAATGTTTTAAATTTTTCTTCAAATTCTTTCCACGGTTCCATCCCTCAAGAAATGTGGACACTGGGGAGTTTACAAAGCCTTGATCTTTCCTTGTGTCACCTAAGTGGAGAGCTTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATTTCTAGATTTAGGTGGCAACAATTTTTCTAGCTCCATTCCTCCAGGGATTGGAGAGTTGCACAAGTTGCAGTATCTGGGTATGGGGGATTGTAACCTTTTTGGTTCCATTCCTCGAGAAATTGGAATGTTGACAAACCTTGAACTTGTTGATTTGTCAAGAAACTCTCTTTCTGGTACTATCCCTGCAACAATAGGTAACATGAGCAGTTTAAATCAGCTTTACCTTTCTAATAACTCCCTAATCTCTGGGAAAATCCCATCCTCTCTGTGGAACATGTCTAACTTGACCTTGCTCTTCCTTGATGCCAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAATCTAGCCAATTTAGAGCAACTTGGACTTGATATCAATCAATTTTCCGGACCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCAACATGTTGTATTTAGGCTTTAATAATCTTTCTGGAGCAATTCCTCCCTCTATAGGTAATTTGATCAATTTGGATGTCCTTAGTCTCCAAGCAAACAAACTCTCTGGACCAATTCCTGATACAGTTGGAAATTTGAAAATGCTCACCGTTTTGGAATTGTCCAGTAACAAACTCAATGGCAGCATTCCACAAGGCTTGAATGACATTGCTAACTGGCTATCCTTGTTACTAGCTGAGAATGATTTCACGGGCCATTTACCTCCTGATATTTGCTCTGCTGGTTCACTACAGTTCTTTAATGCTTTTGGCAACCGTTTCACTGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGGTGGAAAGAAACCAATTGGAAGGTGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGTGTACATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAATCTTCATACCTTAAAGATATCCAACAATAATATCTCCGGGGGTATGCCAATAGAACTTGCTGAGGCAAACAAGCTAGGTGTGCTTCACCTTTCTTCTAATCACTTGAGTGGAAACCTTCCAAAGGAATTAGGGAATATGAAATCGTTATTTCAACTCAAGATTAGCAATAACCATCTTTCTGGAAACATTCCAACAGAAATTGGATTACTGCAAAATCTGGAAGATTTGGATCTTGGAGATAACGAGTTGAGGGGCCCAATACCAATAGAAGTTATGAAATTGCAGAAGTTACGGAATTTAAATTTAAGCAAAAACAATATTGATGGAAGCATTCCCTCTCAGTTTAGCCAATATTTAGTGTCTCTTGATCTTAGTGCCAATTTGTTGATTGGAACGATACCAACAAATATTGGAGAGTTGGAAAGGTTGTTCATGTTGAATCTCTCACATAATAGTCTTTCTGGCACCATTCCTTCCACTTTTAGCAGAGCATTGAGTATCTTCAATATATCAGACAATCAATTAGAAGGGCCAATTCCAAATATTCCACTTTTTCTTGATGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTATGTGGTAATGTCAAGGGATTGGTTCTTTGTCCGACCAATCATAGACGAGAGAGCAACAAAGTGATCCTAGTGACAGGTCTTACTTTAGGAGCCCTAGTACTTGTTCTATGTGGGGTGGCACTTTCAATGTACATCTTTTGTCGTGTTAAAAGAAAGGGAAAAAGTCATTCTAATTCTGAAGAAGCGCCAAGGAAAGCACTCTTTTCCGTATGGAGCTACGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAAGTGGTGTTGCCTTCAGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGCGATGGATGAGGAAATGTCAGAATTTAGTTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTTTTGGTCTATGAGTTCATGGAAGGGGGTAGCTTGGATCAGTTGCTGAACAAAGATACAGAAGCAACTTCATTTGATTGGGAAAAGAGGGTGAATGTAGTTAAAGGCGTGGCCAATGCTTTATCTTATCTGCACCATGATTGCTCACCTCCAATTGTTCATCGTGACATATCAAGTAAAAATGTTCTTTTGGATGTTGAGTACGAAGCTCATGTTTCTGACTTCGGGACTGCTAAGTTTTTGAAGCCTAGTTCAGATAGTTGGACTCAATTCGCAGGCACCTTTGGTTATGCTGCTCCAGAGTTGGCCCAGACAATGGAAGTGAATGAGAAATGTGATGTTTATAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATCTCATTTCTCAGTTTGTGTCACCACCACCTATGCCACCAATTCTTAATGATTTGCTATTGGTTGATGTTTTAGATCAACGACCTCCTCAACCCACAAAACCAATTGATAGGGACTTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCCCGACCAACCATGGAACAAGTATCCAAGGCATTTGAAACAGGAAAATCACCTTCGGCTGACCTCTTTCCTACGATCAGTTTGGGACAACTTTGCTGA 3195 0.3962 MECTFERENSMLLLFLCVFLTLSGPQAAAEDSEANALLKWKRSFDNHSQTLLPTWRGNNPCTWEGIQCDKSNSVSIINLSSYGLKGTLHTLSFSIFSNLLSLNIYQNSFHGTIPPQIGNITKVNVLNFSSNSFHGSIPQEMWTLGSLQSLDLSLCHLSGELPNSIANLSNLSFLDLGGNNFSSSIPPGIGELHKLQYLGMGDCNLFGSIPREIGMLTNLELVDLSRNSLSGTIPATIGNMSSLNQLYLSNNSLISGKIPSSLWNMSNLTLLFLDANNLSGSIPASIENLANLEQLGLDINQFSGPIPSTIGNLTKLNMLYLGFNNLSGAIPPSIGNLINLDVLSLQANKLSGPIPDTVGNLKMLTVLELSSNKLNGSIPQGLNDIANWLSLLLAENDFTGHLPPDICSAGSLQFFNAFGNRFTGPVPRSLKNCSSIARLRVERNQLEGDIAQDFGVYPNLVYIDLSDNKFHGHISPNWGKCHNLHTLKISNNNISGGMPIELAEANKLGVLHLSSNHLSGNLPKELGNMKSLFQLKISNNHLSGNIPTEIGLLQNLEDLDLGDNELRGPIPIEVMKLQKLRNLNLSKNNIDGSIPSQFSQYLVSLDLSANLLIGTIPTNIGELERLFMLNLSHNSLSGTIPSTFSRALSIFNISDNQLEGPIPNIPLFLDAPIESLKNNKGLCGNVKGLVLCPTNHRRESNKVILVTGLTLGALVLVLCGVALSMYIFCRVKRKGKSHSNSEEAPRKALFSVWSYDGKIMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSAMDEEMSEFSSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYEFMEGGSLDQLLNKDTEATSFDWEKRVNVVKGVANALSYLHHDCSPPIVHRDISSKNVLLDVEYEAHVSDFGTAKFLKPSSDSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPRDLISQFVSPPPMPPILNDLLLVDVLDQRPPQPTKPIDRDLILIVRLALACLSQNPRSRPTMEQVSKAFETGKSPSADLFPTISLGQLC 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00677 1064 SMART LRR_typ_2 265 289 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 168 192 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 313 337 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 216 240 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 144 167 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 623 647 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 361 385 IPR003591 -
Viun5g00677 1064 SMART LRR_typ_2 577 600 IPR003591 -
Viun5g00677 1064 FunFam MDIS1-interacting receptor like kinase 2 852 1050 - -
Viun5g00677 1064 SUPERFAMILY RNI-like 77 384 - -
Viun5g00677 1064 FunFam Leucine-rich repeat receptor protein kinase MSP1 733 851 - -
Viun5g00677 1064 SMART LRR_sd22_2 265 291 - -
Viun5g00677 1064 SMART LRR_sd22_2 361 384 - -
Viun5g00677 1064 SMART LRR_sd22_2 313 339 - -
Viun5g00677 1064 SMART LRR_sd22_2 553 585 - -
Viun5g00677 1064 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 385 696 - -
Viun5g00677 1064 ProSitePatterns Tyrosine protein kinases specific active-site signature. 897 909 IPR008266 GO:0004672|GO:0006468
Viun5g00677 1064 Pfam Protein kinase domain 773 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00677 1064 SUPERFAMILY RNI-like 343 660 - -
Viun5g00677 1064 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Viun5g00677 1064 Gene3D Ribonuclease Inhibitor 387 691 IPR032675 -
Viun5g00677 1064 Gene3D Phosphorylase Kinase; domain 1 731 851 - -
Viun5g00677 1064 FunFam MDIS1-interacting receptor like kinase 2 isoform A 186 283 - -
Viun5g00677 1064 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Viun5g00677 1064 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Viun5g00677 1064 FunFam MDIS1-interacting receptor like kinase 2 isoform A 30 185 - -
Viun5g00677 1064 FunFam Piriformospora indica-insensitive protein 2 284 380 - -
Viun5g00677 1064 Gene3D Transferase(Phosphotransferase) domain 1 852 1053 - -
Viun5g00677 1064 Gene3D Ribonuclease Inhibitor 281 386 IPR032675 -
Viun5g00677 1064 Gene3D Ribonuclease Inhibitor 186 280 IPR032675 -
Viun5g00677 1064 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515
Viun5g00677 1064 ProSiteProfiles Protein kinase domain profile. 771 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00677 1064 SUPERFAMILY Protein kinase-like (PK-like) 757 1042 IPR011009 -
Viun5g00677 1064 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 316 1045 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00677 Viun-Chr5 4236836 4240568 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00677 1 945 Receptor kinase-like Gene Family AT4G08850 43.094 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00677 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00677 - - gmx:100814634 1419.83