Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00674 ATGTTGACAAACCTTAGGAATATTGATTTGTCAACAAATTCTCTCTCTGGTACAATCCCTGAAACAATAGGCAACATGTCTAGTTTAAATGAACTTCGACTTTCCAATAACTCCCTTTTATCTGGGCCAATCCCATCCTCCTTATGGACCATGTCTAACTTGACCCTGCTCTTTCTTGATAACAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGTCAATTTAGATAGACTTGGACTTGATTACAACCACCTTTCTGGACCTATTCCTTCCACAATTGGAAACCTGACCAAGCTTACCAAGTTGTTTTTACGCTCTAACAATCTTTCTGGACCAATCCCTCCCTCTATAGGAAATTTGATCAATTTGGAAGTACTTAGTCTCCAAATCAACAATCTCTCCGGAACAATTCCTGCCACAATTGGAAATTTGAAAAACCTCACCATTTTAGAACTATCCTTCAACAAACTTAATGGCAGTGTTTCACAAGTCTTGAATAACATTCGGAACTGGTCTTTGGTATTACTTGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTCCCTAAGCTCTCTTAGTGCTCACCACAACCGTTTCACCGGTCCAATTCCAATAAGCTTAAAGAACTGTGCTAGTATTACTAGACTCAGGTTGGAAGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGATAACAAGTTGTACGGCGAAATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGGTACCTTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTCCTGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGATCAATTCCAAAGGAAATAGGGAATATGAAATCGTTAATTGAACTCAAGATTAGCGACAACCATCTTTCCGGTGACATTCCCAAAGAAATCGGATCACTGGAGATTCTTGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGAACAATACCGAGAGAAGTTGTAGAATTGCGCAACTTACGAAACTTGACTTTGAGCAATAATAAAATATACGGAAATATTCCCTTGGAGTTTCGGAAATTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGACTGGAACAATACCAAAACAGCTTGGAGAGGTGATGAAGCTGCAGTTGCTGAATCTCTCTCACAACAATCTTTCTGGAAATATTCCATCCAGTTTTGATGGCCTTTCAGGTTTGGTTTCTGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAATAATGAAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACAGAGGCTTGTGTGGCAACGTCTCTGGCTTAATCCTTTGCCCAACCAACCACAGTCGGAAGAGGCACAAGGGTATTCAACTAGCATTATTTATTTTCTTGGGTGCTCTTGTTCTAGTGTTATGTGGGGTCTCAGTTTCAATGTATATTCTCTGTCGAAAAGCAAGAAAGGAAGATTTAAATGCTAAAGAAAATGTGCATTCTGGAAAGAAACCGTCTGGAGAAGTGTTTTCCATATGGAGTCACGATGGAAAAATTATATTCGAAAACATCATTGAAGCAACCGATAATTTCAACGAAAAATATCTGATTGGACTTGGAGGGCAAGGCTCTGTTTACAAAGCTGAGATGCCTACAGGCCAGGTTTTTGCGGTGAAGAAACTTCACATGGAAACAGATGAAGAGAAGCCTAATTTTAAAGCTTTTGAAAATGAAATCCAAGCTTTGACAGAAATCAGGCACCGTAACATTGTAAAGCTATGTGGATTTTGCTCACATTCAAGGTTCTCCTTTTTGGTCTACGAGTTCTTGGAAGGGGGTAGCTTGGACCAAATACTAATCAATGAAAAGAAAGCAGCTTCATTTTACTGGGAAGAGAGGGTAAATGTCGTTAAAGGTGTGGCCCATGCTTTATCTTATATGCATCACGATTGCTCACCACCAATAATTCATCGAGACATATCCAGCAAGAATATTCTTTTAGATTCACAAAAAGAACCTCATGTCTCTGATTTTGGGACAGCTAAGATTCTAAAACCTGGTTCAAGCACTTGGACCACATTTGCAGGCACCTTTGGATATGCAGCTCCAGAGTTTGCCCAGACTATGGAAGTGACTGAGAAATGTGATGTGTTCAGTTTTGGAGTGCTTTGTCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCATTTCTTCGTTGTTATCTTCATCTTCAGCAGTAATAACTCATAACTTGCTACTAATTGATGTGATAGACCAAAGACCTCGTCATCCTCTTAAATCGGTTGTTGGGGATGTCATTTTGGTTGCAATCTTAGCATTTTCTTGCTTGAGTGAAAATCCATGTTCTCGCCCAACAATGGAACAAGTGTCCAAAAAGCTTATGATGGGTAAATCACCTTTAGCAGATGAGTTCCCTAATATCAGACTTGCGCAACTCCTCCAAAGCAATATTTAA 2583 0.3949 MLTNLRNIDLSTNSLSGTIPETIGNMSSLNELRLSNNSLLSGPIPSSLWTMSNLTLLFLDNNNLSGSIPASIENLVNLDRLGLDYNHLSGPIPSTIGNLTKLTKLFLRSNNLSGPIPPSIGNLINLEVLSLQINNLSGTIPATIGNLKNLTILELSFNKLNGSVSQVLNNIRNWSLVLLAENDFTGHLPPQICSAGSLSSLSAHHNRFTGPIPISLKNCASITRLRLEGNQLEGDISQDFGVYPNLEYIDLSDNKLYGEISPNWGKCPNLGTLKISNNNISGGIPVELPEATKLGKLHLSSNHLKGSIPKEIGNMKSLIELKISDNHLSGDIPKEIGSLEILEELDLGDNQLSGTIPREVVELRNLRNLTLSNNKIYGNIPLEFRKFQPLEYLDLSGNLLTGTIPKQLGEVMKLQLLNLSHNNLSGNIPSSFDGLSGLVSVNISYNQLEGPLPNNEAFLNASIESLKNNRGLCGNVSGLILCPTNHSRKRHKGIQLALFIFLGALVLVLCGVSVSMYILCRKARKEDLNAKENVHSGKKPSGEVFSIWSHDGKIIFENIIEATDNFNEKYLIGLGGQGSVYKAEMPTGQVFAVKKLHMETDEEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHSRFSFLVYEFLEGGSLDQILINEKKAASFYWEERVNVVKGVAHALSYMHHDCSPPIIHRDISSKNILLDSQKEPHVSDFGTAKILKPGSSTWTTFAGTFGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLISSLLSSSSAVITHNLLLIDVIDQRPRHPLKSVVGDVILVAILAFSCLSENPCSRPTMEQVSKKLMMGKSPLADEFPNIRLAQLLQSNI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00674 860 ProSiteProfiles Protein kinase domain profile. 566 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00674 860 SMART LRR_typ_2 2 26 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 51 75 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 315 339 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 363 386 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 147 170 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 411 434 IPR003591 -
Viun5g00674 860 SMART LRR_typ_2 99 123 IPR003591 -
Viun5g00674 860 Gene3D Phosphorylase Kinase; domain 1 527 644 - -
Viun5g00674 860 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 80 - -
Viun5g00674 860 SUPERFAMILY Protein kinase-like (PK-like) 544 836 IPR011009 -
Viun5g00674 860 SUPERFAMILY L domain-like 205 474 - -
Viun5g00674 860 ProSitePatterns Tyrosine protein kinases specific active-site signature. 690 702 IPR008266 GO:0004672|GO:0006468
Viun5g00674 860 Gene3D Transferase(Phosphotransferase) domain 1 645 846 - -
Viun5g00674 860 FunFam MDIS1-interacting receptor like kinase 2 645 842 - -
Viun5g00674 860 Pfam Protein kinase domain 567 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00674 860 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 81 148 - -
Viun5g00674 860 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 171 486 - -
Viun5g00674 860 Gene3D Ribonuclease Inhibitor 179 491 IPR032675 -
Viun5g00674 860 PANTHER LEUCINE RICH REPEAT KINASE 2 95 840 - -
Viun5g00674 860 Gene3D Ribonuclease Inhibitor 1 177 IPR032675 -
Viun5g00674 860 Pfam Leucine rich repeat 3 64 IPR001611 GO:0005515
Viun5g00674 860 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Viun5g00674 860 Pfam Leucine rich repeat 390 448 IPR001611 GO:0005515
Viun5g00674 860 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Viun5g00674 860 ProSiteProfiles Leucine-rich repeat profile. 365 386 IPR001611 GO:0005515
Viun5g00674 860 SUPERFAMILY L domain-like 2 305 - -
Viun5g00674 860 SMART LRR_sd22_2 339 362 - -
Viun5g00674 860 SMART LRR_sd22_2 363 392 - -
Viun5g00674 860 SMART LRR_sd22_2 411 437 - -
Viun5g00674 860 SMART LRR_sd22_2 99 125 - -
Viun5g00674 860 SMART LRR_sd22_2 51 77 - -
Viun5g00674 860 SMART LRR_sd22_2 2 28 - -
Viun5g00674 860 SMART LRR_sd22_2 147 173 - -
Viun5g00674 860 FunFam Leucine-rich repeat receptor protein kinase MSP1 529 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00674 Viun-Chr5 4195205 4198608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00674 2 738 Receptor kinase-like Gene Family AT4G08850 44.318 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00674 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00674 - - vra:106759489 1536.55