Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00671 ATGGTATCCATAAAGATTCTATCACAACTTGCTTGTTTCTGCCAAATCCTTTATTTGGCCTCTACTGCCACCTCAGTCACTATTGTTGATGAAACTGTAGATGTAGCTGAGAACAGTGAAGCCAATGCACTGTTAAAGTGGAAACAAAGCCTTGACACAACCAGCCAAGATATCTTGTCAACATGGAAAGTTGTTACACCATGCAAATGGGAAGGAATTCATTGTAACAACTCCAACTCCATCTCCACCATAGATCTTGCAAATTATGGTCTCATAGGGTCCCTAAGCTCCCTTAGTGCTCACCACAACCGTTTCACCGGTCCAGTTCCAATAAGCTTGAAGAACTGTGCTAGTCTTAGTAGACTCAGGTTGGAAGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTGATCTTGATACCTTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTGCTGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGAAACATTCCAAAGGAATTAGGGAATACGAAATCGCTAATTGAACTCAAGATTAGCCACAACCATCTTTCAGGAGACATTCCCAAAGAAATTGGGTCACTGCAAATTCTTGAACAATTGGATCTTGGAGATAACCAGTTGAGTGGAACAATACCAGTAGAAGTTGTAGAGTTGCCTAAGTTACGAAACTTGACTTTGAGCAATAATAAAATAAACGGAAATATCCCGTTGGAGTTTCGACAACTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGACTGGAACAATACCAAGACAACTTGGAGCGGTGATTAAACTGAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCGTCCAGTTTTGACGGCATGTCAAATTTGGTTTCTGTCAACATATCATACAATCGGTTAGAAGGGCCACTTCCCAAAAATCGAGCCTTTCTTAGGTCTTCCATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACGTCACTGGGTTGATGCTTTGCCCAACCAACCGCAATGAAAAGAAGCGCAAGGGCGTTGTTCTGATATTAATTCTCATGTTGGGTGCACTTGCGTTAGTATTGTGTGGGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAGAAGCCGAAGCTAAAAGGAAAGAAGCATCAGAAAATGCACTGTCTGAAGAAGTGTTTTCCGTTTGGAGTCGTGATGGAAAAATTATGTTTGAAACTATCATTGAAGCTACGAACAATTTTAATGACAAATATCTCATAGGGGTCGGAGGTCAGGCAAATGTTTACAGGGTTGAGTTCCCCTCAGGTGAGGTCTATGCGGTGAAGAAACTTCATCTAGAAGCAGACGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTCTGCGGGTTTTGCTCACATCCACGATTCACATTCTTGGTTTACAAGTTCATGGAAGGGGGTAGCTTGGATCAAATGCTAAGCAATGAGAAAAAAGCATTTGCATTTGATTGGGAAAAGAGGGTGAATGTGGTTAAAGGTGTGGCCAATGCTTTGTCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTGGATTCACAGTACGAGGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGCTCTTGGACAACGTTTGAAGGCACCTTAGGGTATGCAGCTCCAGAGTTTGCCCAAACTATGGAAGTGACTGAGAAATGTGATGTGTTCAGTTTTGGAGTGCTTTGTCTAGAAATCATCATGGGGAAACACCCGGGGGATCTGATTTCTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTGCTACTAGTTGATGTGATAGACCAAAGACCTTCTCATCCTCATGAATCAGTTGTCGGGGATGTCATTTTAGTTTCAAACTTGGCATTTTCTTGCTTGAGTGAGAATCCAAGTTCTCGCCCAACAATGGATCAAGTGTCCAAAACGCTGATGATGGGGAAATCTTCATTACCAGCTGAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 2262 0.4125 MVSIKILSQLACFCQILYLASTATSVTIVDETVDVAENSEANALLKWKQSLDTTSQDILSTWKVVTPCKWEGIHCNNSNSISTIDLANYGLIGSLSSLSAHHNRFTGPVPISLKNCASLSRLRLEGNQLEGDISQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPDLDTLKISNNNISGGIPVELAEATKLGKLHLSSNHLKGNIPKELGNTKSLIELKISHNHLSGDIPKEIGSLQILEQLDLGDNQLSGTIPVEVVELPKLRNLTLSNNKINGNIPLEFRQLQPLEYLDLSGNLLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFDGMSNLVSVNISYNRLEGPLPKNRAFLRSSIESLKNNTGLCGNVTGLMLCPTNRNEKKRKGVVLILILMLGALALVLCGVGVSMYILCRKARKKEAEAKRKEASENALSEEVFSVWSRDGKIMFETIIEATNNFNDKYLIGVGGQANVYRVEFPSGEVYAVKKLHLEADGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQMLSNEKKAFAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEEARVTDFGTAKILKPGCSWTTFEGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLISSLLSSSSAAITHNLLLVDVIDQRPSHPHESVVGDVILVSNLAFSCLSENPSSRPTMDQVSKTLMMGKSSLPAELPMIRLGQLL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00671 753 FunFam MDIS1-interacting receptor like kinase 2 542 739 - -
Viun5g00671 753 Pfam Leucine rich repeat 141 201 IPR001611 GO:0005515
Viun5g00671 753 Pfam Leucine rich repeat 214 273 IPR001611 GO:0005515
Viun5g00671 753 Pfam Leucine rich repeat 287 345 IPR001611 GO:0005515
Viun5g00671 753 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Viun5g00671 753 ProSitePatterns Tyrosine protein kinases specific active-site signature. 587 599 IPR008266 GO:0004672|GO:0006468
Viun5g00671 753 SUPERFAMILY Protein kinase-like (PK-like) 450 733 IPR011009 -
Viun5g00671 753 Pfam Protein kinase domain 464 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00671 753 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Viun5g00671 753 Gene3D Ribonuclease Inhibitor 36 181 IPR032675 -
Viun5g00671 753 Gene3D Transferase(Phosphotransferase) domain 1 542 741 - -
Viun5g00671 753 FunFam Leucine-rich repeat receptor protein kinase MSP1 425 541 - -
Viun5g00671 753 ProSiteProfiles Protein kinase domain profile. 463 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00671 753 SUPERFAMILY L domain-like 64 352 - -
Viun5g00671 753 Gene3D Ribonuclease Inhibitor 279 385 IPR032675 -
Viun5g00671 753 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 77 383 - -
Viun5g00671 753 PANTHER LEUCINE RICH REPEAT KINASE 2 75 739 - -
Viun5g00671 753 Gene3D Phosphorylase Kinase; domain 1 421 541 - -
Viun5g00671 753 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00671 Viun-Chr5 4175727 4179552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00671 93 635 Receptor kinase-like Gene Family AT4G08850 45.931 1.63e-152 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00671 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00671 - - pvu:PHAVU_008G047600g 1093.18