Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00670 ATGGTATCCATAAAGATTCTATCACAACTTGCTTGTTTCTGCCAAATCCTTTATTTGGCCTCTACTGCCACCTCAGTCACTATTGTTGATGAAACTGTAGATGTAGCTGAGAACAGTGAAGCCAATGCACTGTTAAAGTGGAAACAAAGCCTTGACACAACCAGCCAAGATATCTTGTCAACATGGAAAGTTGTTACACCATGCAAATGGGAAGGAATTCATTGTAACAACTCCAACTCCATCTCCACCATAGATCTTGCAAATTATGGTCTCATAGGTACCCTTCACACCCTCAACTTCTCAGCTTTCCCTAACCTACTCATCCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACATGTCCACACTAAATGTTTTGAATCTTTCTACAAATTACTTCAATGGTTCCATCCCTCAGCAAGTGTGGACACTAAGGAGTTTACAAGGCCTTGATCTATTTCAATGTGAACTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACTTGTCATATCTAGATTTAGGCTTCAACAGTTTTTCTGGCCACATTCCATCAGAGATTGGAAAGTTGCACAAGTTAGAGTATCTAGCTATTACAAATAATCAAATTTTCGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGGGTTCATGGATTTGTCAGAAAACTCTCTCTCTGGTACTATCCCTGAAACAATAGGTAACATGAGCAATTTAAGTCAACTTTACATTTCTAACAACTCCCACCTACATGGGCCAATCCCATCCTCCTTATGGAACATGTCCAAGTTGACAGTACTCAACCTTTATGGCAATAACCATTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGCCAATTTAGATGAACTTGGACTTGATTACAACCAACTTTCCGGTCCCATTCCTTCCACGATTGGAAAGCTGACAAAGCTTACCTATTTGCTTTTAAGCTTCAACAATTTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAAATGCTTGGTCTCGAAAGCAACAATCTCTCAGGAACAATCCCTGCCACAATTGGAAATTTGAAAAGGCTAACCTACTTAGCATTGTCCGTCAATAAACTTAATGGCAGTATTTCACAAATCTTGAATAACAATAATAAATGGTATTTCGTGTTACTTGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCAGGGTCCCTAAGCTCCCTTAGTGCTCACCACAACCGTTTCACCGGTCCAGTTCCAATAAGCTTGAAGAACTGTGCTAGTCTTAGTAGACTCAGGTTGGAAGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTGATCTTGATACCTTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTGCTGAGGCAACCAAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGAAACATTCCAAAGGAATTAGGGAATACGAAATCGCTAATTGAACTCAAGATTAGCCACAACCATCTTTCAGGAGACATTCCCAAAGAAATTGGGTCACTGCAAATTCTTGAACAATTGGATCTTGGAGATAACCAGTTGAGTGGAACAATACCAGTAGAAGTTGTAGAGTTGCCTAAGTTACGAAACTTGACTTTGAGCAATAATAAAATAAACGGAAATATCCCGTTGGAGTTTCGACAACTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGACTGGAACAATACCAAGACAACTTGGAGCGGTGATTAAACTGAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCGTCCAGTTTTGACGGCATGTCAAATTTGGTTTCTGTCAACATATCATACAATCGGTTAGAAGGGCCACTTCCCAAAAATCGAGCCTTTCTTAGGTCTTCCATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACGTCACTGGGTTGATGCTTTGCCCAACCAACCGCAATGAAAAGAAGCGCAAGGGCGTTGTTCTGATATTAATTCTCATGTTGGGTGCACTTGCGTTAGTATTGTGTGGGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAGAAGCCGAAGCTAAAAGGAAAGAAGCATCAGAAAATGCACTGTCTGAAGAAGTGTTTTCCGTTTGGAGTCGTGATGGAAAAATTATGTTTGAAACTATCATTGAAGCTACGAACAATTTTAATGACAAATATCTCATAGGGGTCGGAGGTCAGGCAAATGTTTACAGGGTTGAGTTCCCCTCAGGTGAGGTCTATGCGGTGAAGAAACTTCATCTAGAAGCAGACGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTCTGCGGGTTTTGCTCACATCCACGATTCACATTCTTGGTTTACAAGTTCATGGAAGGGGGTAGCTTGGATCAAATGCTAAGCAATGAGAAAAAAGCATTTGCATTTGATTGGGAAAAGAGGGTGAATGTGGTTAAAGGTGTGGCCAATGCTTTGTCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTGGATTCACAGTACGAGGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGCTCTTGGACAACGTTTGAAGGCACCTTAGGGTATGCAGCTCCAGAGTTTGCCCAAACTATGGAAGTGACTGAGAAATGTGATGTGTTCAGTTTTGGAGTGCTTTGTCTAGAAATCATCATGGGGAAACACCCGGGGGATCTGATTTCTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTGCTACTAGTTGATGTGATAGACCAAAGACCTTCTCATCCTCATGAATCAGTTGTCGGGGATGTCATTTTAGTTTCAAACTTGGCATTTTCTTGCTTGAGTGAGAATCCAAGTTCTCGCCCAACAATGGATCAAGTGTCCAAAACGCTGATGATGGGGAAATCTTCATTACCAGCTGAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 3234 0.4035 MVSIKILSQLACFCQILYLASTATSVTIVDETVDVAENSEANALLKWKQSLDTTSQDILSTWKVVTPCKWEGIHCNNSNSISTIDLANYGLIGTLHTLNFSAFPNLLILNIYNNSFYGTIPPQIGNMSTLNVLNLSTNYFNGSIPQQVWTLRSLQGLDLFQCELSGEIPNSIANLSNLSYLDLGFNSFSGHIPSEIGKLHKLEYLAITNNQIFGSIPQEIGMLTNLGFMDLSENSLSGTIPETIGNMSNLSQLYISNNSHLHGPIPSSLWNMSKLTVLNLYGNNHSGSIPASIENLANLDELGLDYNQLSGPIPSTIGKLTKLTYLLLSFNNFSGSIPPSIGNLINLEMLGLESNNLSGTIPATIGNLKRLTYLALSVNKLNGSISQILNNNNKWYFVLLAENDFTGHLPPQICSAGSLSSLSAHHNRFTGPVPISLKNCASLSRLRLEGNQLEGDISQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPDLDTLKISNNNISGGIPVELAEATKLGKLHLSSNHLKGNIPKELGNTKSLIELKISHNHLSGDIPKEIGSLQILEQLDLGDNQLSGTIPVEVVELPKLRNLTLSNNKINGNIPLEFRQLQPLEYLDLSGNLLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFDGMSNLVSVNISYNRLEGPLPKNRAFLRSSIESLKNNTGLCGNVTGLMLCPTNRNEKKRKGVVLILILMLGALALVLCGVGVSMYILCRKARKKEAEAKRKEASENALSEEVFSVWSRDGKIMFETIIEATNNFNDKYLIGVGGQANVYRVEFPSGEVYAVKKLHLEADGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQMLSNEKKAFAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEEARVTDFGTAKILKPGCSWTTFEGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLISSLLSSSSAAITHNLLLVDVIDQRPSHPHESVVGDVILVSNLAFSCLSENPSSRPTMDQVSKTLMMGKSSLPAELPMIRLGQLL 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00670 1077 Pfam Leucine rich repeat 611 669 IPR001611 GO:0005515
Viun5g00670 1077 Pfam Leucine rich repeat 465 525 IPR001611 GO:0005515
Viun5g00670 1077 Pfam Leucine rich repeat 538 597 IPR001611 GO:0005515
Viun5g00670 1077 SUPERFAMILY RNI-like 84 391 - -
Viun5g00670 1077 PANTHER LEUCINE RICH REPEAT KINASE 2 341 1063 - -
Viun5g00670 1077 FunFam MDIS1-interacting receptor like kinase 2 isoform A 37 192 - -
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 481 579 IPR032675 -
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 191 289 IPR032675 -
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 290 397 IPR032675 -
Viun5g00670 1077 ProSiteProfiles Protein kinase domain profile. 787 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00670 1077 SUPERFAMILY Protein kinase-like (PK-like) 774 1057 IPR011009 -
Viun5g00670 1077 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Viun5g00670 1077 Coils Coil 744 764 - -
Viun5g00670 1077 Gene3D Phosphorylase Kinase; domain 1 745 865 - -
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 398 480 IPR032675 -
Viun5g00670 1077 ProSitePatterns Tyrosine protein kinases specific active-site signature. 911 923 IPR008266 GO:0004672|GO:0006468
Viun5g00670 1077 Gene3D Transferase(Phosphotransferase) domain 1 866 1065 - -
Viun5g00670 1077 SUPERFAMILY L domain-like 438 695 - -
Viun5g00670 1077 Pfam Leucine Rich Repeat 274 296 IPR001611 GO:0005515
Viun5g00670 1077 Pfam Protein kinase domain 788 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
Viun5g00670 1077 Gene3D Ribonuclease Inhibitor 580 703 IPR032675 -
Viun5g00670 1077 SMART LRR_typ_2 223 247 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 296 320 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 175 199 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 608 632 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 103 127 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 584 607 IPR003591 -
Viun5g00670 1077 SMART LRR_typ_2 344 368 IPR003591 -
Viun5g00670 1077 FunFam MDIS1-interacting receptor like kinase 2 866 1063 - -
Viun5g00670 1077 FunFam Leucine-rich repeat receptor protein kinase EMS1 216 301 - -
Viun5g00670 1077 FunFam Leucine-rich repeat receptor protein kinase MSP1 749 865 - -
Viun5g00670 1077 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 391 707 - -
Viun5g00670 1077 FunFam Piriformospora indica-insensitive protein 2 302 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00670 Viun-Chr5 4175727 4179566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00670 15 959 Receptor kinase-like Gene Family AT4G08850 42.991 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00670 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00670 - - vra:106759489 1615.51