Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00660 ATGGATAGTTATAACAACAGCATAACCACGAATGGTAGTTCAGGATTTGATGAGACATTATTTTCGGACACTATTGAACATTACATGGTTCATGACGATGGTTTGAACAACAACAATGTGTTTGTGTCGAACGAGGAATGGTTCTCAGGGGAAGGTGATAAAGCAGAAGAGCTAGTTGGAAGAGGGACGAGGTACAAAGGAGTGAGGCGTAGGGCACATGGAAAATTTGCTGCAGAGATAAAAGATCCGAACAGAAGTAATAGGGTTTGGCTTGGTACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATCAGAGGCTCTAAAGCCAAGCTCAATTTTCCTCACCTCATTCCACCGTTGGATGCACCCATCGATCACCCTCCTCCTTCTTCTTCTTCTTCTTCATCATCCTCATCTCAGGATCCTTCCAAGAAAAGGAAGGGACTAGCTGGTTTGCTCAATAAATTAGCACATGAAAAAAACAGAATTTGA 513 0.423 MDSYNNSITTNGSSGFDETLFSDTIEHYMVHDDGLNNNNVFVSNEEWFSGEGDKAEELVGRGTRYKGVRRRAHGKFAAEIKDPNRSNRVWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPHLIPPLDAPIDHPPPSSSSSSSSSSQDPSKKRKGLAGLLNKLAHEKNRI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00660 170 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 MobiDBLite consensus disorder prediction 125 170 - -
Viun5g00660 170 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 MobiDBLite consensus disorder prediction 134 151 - -
Viun5g00660 170 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Viun5g00660 170 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Viun5g00660 170 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Viun5g00660 170 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Viun5g00660 170 PANTHER DNA-BINDING DOMAIN 54 151 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00660 Viun-Chr5 3970475 3970987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00660 61 124 AP2-EREBP Transcription Factor Family AT2G44840 70.769 6.26e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun5g00660 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00660 K09286 - pvu:PHAVU_008G046500g 192.2