Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00659 ATGACTTCAGCCACCACAGATTCCGACTTTGCGTTCTTGGAATCCGTTCGACAGTACCTAATTGGACACGATTCCATCAATCTCATGCCTGCAACTTCTCACGATCCACTTTCAAACCCTAAACGCGATGGCGATTTCGAGAACATTGTTTTTCGAAGTGAGGACGCAACTGCTGCGGTGGCGCGTCATGTCTACGCACCACCGGCATGGAAGCATTACCGAGGTGTGAGGCGCAGGCCATGGGGGAAATTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAGCTAGAGTTTGGCTGGGAACTTTTGACACGGAGGAGAAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAGGATGCGCGGTCAAAAAGCGAAGTTGAATTTTCCTCATCTTATAGATTCTGATAATTTTGAAACATTGTCAGAACCGGTGATGGAAACAGATCATAAGAGGAAGTTGTCGGAAAGTTTTGAAGCATGTTCACCGTCATCGTCGTGTTCAGAAGATAGTTCAGAGTCACAAGGGACAAAGAGGAGGAAGAACCTCACTGATCTATTGAATAAGTTAGCAAAGAGTAGAAGCCAAGCCAGGGTAGTGGGTTAG 606 0.4719 MTSATTDSDFAFLESVRQYLIGHDSINLMPATSHDPLSNPKRDGDFENIVFRSEDATAAVARHVYAPPAWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTFDTEEKAALAYDKAAFRMRGQKAKLNFPHLIDSDNFETLSEPVMETDHKRKLSESFEACSPSSSCSEDSSESQGTKRRKNLTDLLNKLAKSRSQARVVG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00659 201 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
Viun5g00659 201 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Viun5g00659 201 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 CDD AP2 71 132 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Viun5g00659 201 MobiDBLite consensus disorder prediction 160 182 - -
Viun5g00659 201 PANTHER DNA-BINDING DOMAIN 63 176 IPR044808 GO:0003700|GO:0009873
Viun5g00659 201 FunFam Ethylene-responsive transcription factor 2 71 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00659 Viun-Chr5 3965931 3966873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00659 72 141 AP2-EREBP Transcription Factor Family AT2G44840 77.143 9.05e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g00659 AP2 5.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00659 K09286 - gmx:548037 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00135 10 813881 814571 Viun5g00659 5 3965931 3966873 PCT