Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun5g00658 | ATGTCATCCACCACCACGGATTCAGAGTGTGCATTTCTGGAACAGATTCAGCAGTATCTCCTTCACAACGATTCAACCATTGTAACACCATCTCAAGCTTTTCCTTGCCCTATGCATGACAGTTCTTCGGATGCAAGTGTCGACTTTGAGCACCCCACTGAAGCGCGTGAAGTGAACGCGTCGCCCAAGTGGAGGCGTTACAGGGGTGTGAGGCGACGGCCGTGGGGAAAGTTCGCAGCCGAGATAAGGGACCCTAAGAAAAACGGTGCTAGGGTTTGGCTGGGAACTTACGTGACTGAAGAGGAAGCAGCTATGGCTTATGACAAAGCTGCTTTCAAGATGCGAGGCCGAAAAGCTAAACTGAATTTTCCACATCTCATTGACTCCGATGTGTCATCGGAGCCACCATGTGCGGCGGCTTTGAAGCGGAACTTTCCAGAACCTTCTCCACCGCCACCACCACCATCGATGGATGATAGTTGTTTTAAGTCACAAGGGTCAAAGAGGAGAAAGAACTTACTAAATAACTTAGCCAAAAATAGAAGAAGCCAAGCCAAGGTGGTTGAAATGGCTTTGGAGGGAAATGTGGTTGAACAATGGGTGAATGATTTCAATGATTGCACTCTAATCTGGTGTTCCTAG | 642 | 0.4829 | MSSTTTDSECAFLEQIQQYLLHNDSTIVTPSQAFPCPMHDSSSDASVDFEHPTEAREVNASPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDKAAFKMRGRKAKLNFPHLIDSDVSSEPPCAAALKRNFPEPSPPPPPPSMDDSCFKSQGSKRRKNLLNNLAKNRRSQAKVVEMALEGNVVEQWVNDFNDCTLIWCS | 213 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun5g00658 | 213 | FunFam | Ethylene-responsive transcription factor 2 | 65 | 125 | - | - | |
Viun5g00658 | 213 | SUPERFAMILY | DNA-binding domain | 66 | 125 | IPR016177 | GO:0003677 | |
Viun5g00658 | 213 | SMART | rav1_2 | 66 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | MobiDBLite | consensus disorder prediction | 140 | 165 | - | - | |
Viun5g00658 | 213 | CDD | AP2 | 74 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | PRINTS | Ethylene responsive element binding protein signature | 106 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | PANTHER | DNA-BINDING DOMAIN | 45 | 179 | IPR044808 | GO:0003700|GO:0009873 | |
Viun5g00658 | 213 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g00658 | 213 | Gene3D | AP2/ERF domain | 65 | 125 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun5g00658 | Viun-Chr5 | 3959052 | 3959957 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun5g00658 | 63 | 149 | AP2-EREBP Transcription Factor Family | AT2G44840 | 70.115 | 2.23e-35 | 123 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Viun5g00658 | AP2 | 2.4e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun5g00658 | K09286 | - | gmx:102663872 | 316.235 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun5g00658 | 5 | 3959052 | 3959957 | Viun5g00658 | 5 | 3959052 | 3959957 | ECH | |
Viun10g00134 | 10 | 805798 | 806553 | Viun5g00658 | 5 | 3959052 | 3959957 | PCT |