Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00658 ATGTCATCCACCACCACGGATTCAGAGTGTGCATTTCTGGAACAGATTCAGCAGTATCTCCTTCACAACGATTCAACCATTGTAACACCATCTCAAGCTTTTCCTTGCCCTATGCATGACAGTTCTTCGGATGCAAGTGTCGACTTTGAGCACCCCACTGAAGCGCGTGAAGTGAACGCGTCGCCCAAGTGGAGGCGTTACAGGGGTGTGAGGCGACGGCCGTGGGGAAAGTTCGCAGCCGAGATAAGGGACCCTAAGAAAAACGGTGCTAGGGTTTGGCTGGGAACTTACGTGACTGAAGAGGAAGCAGCTATGGCTTATGACAAAGCTGCTTTCAAGATGCGAGGCCGAAAAGCTAAACTGAATTTTCCACATCTCATTGACTCCGATGTGTCATCGGAGCCACCATGTGCGGCGGCTTTGAAGCGGAACTTTCCAGAACCTTCTCCACCGCCACCACCACCATCGATGGATGATAGTTGTTTTAAGTCACAAGGGTCAAAGAGGAGAAAGAACTTACTAAATAACTTAGCCAAAAATAGAAGAAGCCAAGCCAAGGTGGTTGAAATGGCTTTGGAGGGAAATGTGGTTGAACAATGGGTGAATGATTTCAATGATTGCACTCTAATCTGGTGTTCCTAG 642 0.4829 MSSTTTDSECAFLEQIQQYLLHNDSTIVTPSQAFPCPMHDSSSDASVDFEHPTEAREVNASPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAAMAYDKAAFKMRGRKAKLNFPHLIDSDVSSEPPCAAALKRNFPEPSPPPPPPSMDDSCFKSQGSKRRKNLLNNLAKNRRSQAKVVEMALEGNVVEQWVNDFNDCTLIWCS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00658 213 FunFam Ethylene-responsive transcription factor 2 65 125 - -
Viun5g00658 213 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Viun5g00658 213 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 MobiDBLite consensus disorder prediction 140 165 - -
Viun5g00658 213 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 PANTHER DNA-BINDING DOMAIN 45 179 IPR044808 GO:0003700|GO:0009873
Viun5g00658 213 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Viun5g00658 213 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00658 Viun-Chr5 3959052 3959957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00658 63 149 AP2-EREBP Transcription Factor Family AT2G44840 70.115 2.23e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g00658 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00658 K09286 - gmx:102663872 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00658 5 3959052 3959957 Viun5g00658 5 3959052 3959957 ECH
Viun10g00134 10 805798 806553 Viun5g00658 5 3959052 3959957 PCT