Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00634 ATGGCTGAAAAAGATGATGGGGTTGGCTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACAACCTTTCAAGGTGAATCACATGCACCACCCTCAACAACATCCTCAACACCATCAACCACAACACCATCAACCCCAACCTGTTCCCGTAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGGAATCGACGTGAAGTCCACGGCGGACTGTGAGGAAGACAACGGAATTTCGTCGCCGAACAGCGCCGTGTCAAGCGTTAGCGGCGGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCGTTGGTTGCCGGAGAGAGGACGTCGTGCTCGCGGGGGAGCGATGACGATGATGGTGGCGGCGGAGACGGCGAAGGCGGCGAAGGCGGGAGGAAGAAACTGAGGCTCACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACACTCAATCCGAAACGAAAACAAGCTTTGGCAGAGGAGTTGAATCTGAAGCCAAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACGGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGAATTTAACTGAAGACAATAGAAGGTTGCAGAAGGAGGTTCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACAACTCTCACAATGTGCCCCTCTTGTGAGCGTGGTCACTCGTCTTCATCTCCTGCCACCGCTGCCGGCCACCCGGTAGTGGTGCCGCCGACTTCTCGCAAGCTGTTTGGGGCAAACATCCGGCGGCCGGTGGCAGTGAACACTTGGCCGTTTGATGGCTCAATTCCTCGGCCATAA 909 0.5182 MAEKDDGVGLSLSLSLGVNQQPFKVNHMHHPQQHPQHHQPQHHQPQPVPVNHNKTLFADLFQLPDRSSDVIRGIDVKSTADCEEDNGISSPNSAVSSVSGGKRSERDDDNAALVAGERTSCSRGSDDDDGGGGDGEGGEGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERGHSSSSPATAAGHPVVVPPTSRKLFGANIRRPVAVNTWPFDGSIPRP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00634 302 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Viun5g00634 302 SUPERFAMILY Homeodomain-like 128 199 IPR009057 -
Viun5g00634 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 264 - -
Viun5g00634 302 SMART HOX_1 140 202 IPR001356 GO:0003677
Viun5g00634 302 MobiDBLite consensus disorder prediction 252 272 - -
Viun5g00634 302 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Viun5g00634 302 Gene3D - 126 201 - -
Viun5g00634 302 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355|GO:0043565
Viun5g00634 302 MobiDBLite consensus disorder prediction 83 100 - -
Viun5g00634 302 MobiDBLite consensus disorder prediction 81 146 - -
Viun5g00634 302 FunFam Homeobox-leucine zipper protein 18 126 203 - -
Viun5g00634 302 CDD homeodomain 143 199 IPR001356 GO:0003677
Viun5g00634 302 Pfam HD-ZIP protein N terminus 1 107 IPR006712 GO:0005634
Viun5g00634 302 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Viun5g00634 302 MobiDBLite consensus disorder prediction 121 146 - -
Viun5g00634 302 Coils Coil 204 231 - -
Viun5g00634 302 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Viun5g00634 302 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00634 Viun-Chr5 3884746 3887932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00634 1 255 Homeobox Transcription Factor Family AT3G60390 56.993 2.99e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun5g00634 HD-ZIP_N 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00634 K09338 - gmx:100819624 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00634 5 3884746 3887932 Viun5g00634 5 3884746 3887932 ECH
Viun10g00113 10 715227 719581 Viun5g00634 5 3884746 3887932 PCT