Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00627 ATGCAAACTGAATACCTATTCCAGCCTTGTTCAGTTCGTGATAAGAAACCAAGGCAGAATCAGTTGGTCATAATCCTTTCTATCACCATTTTTTTATTAATGGCCTTCTTCCTACTTTTATATCTGAGGCACAACAGCATTGCAATCAAGAGCAAACATGCAAGGATAACTGAAACATCTAAGAACGGGGATTTGTTCTGCATATGGAACTATAACGGAAGCATAGCCTATGAAGACATCATTACTGCAACCGAAGACTTTAACCTCAAATATTGTATCGGAACAGGTGCATACGGGAGTGTCTATAGGGCTCAACTACCAAGTGGCAGGATTGTTGCGGTGAAGAAACTCCATGGTTTTGAAGCAGAGGTCCCCTCATTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAACACAGACACATAGTGAAGCTCCATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGAAGCTTGTTTTCTGTGTTGTTTGATGACATGGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTAACATAGTGAAAGGCACTGCACACGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCTATAGTCCATAGAGACATATCAGCCAGCAATGTGTTGCTTAACTCCATGTGGGAGCCCACCGTTTCCGACTTTGGCACAGCTCGATTTCTCAACCTTGATTCATCCAATCGAACTATTGTTGCTGGAACCATCGGATACATAGCACCTGAACTTGCGTATACAATGGTTGTTAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCACTGGAAACTCTGATGGGAAAACATCCTAAGGAAATACTCTCATCACTTCAATCAATTTCTACTGATGATGGCATCAAATTATGTGAAATATTGGACCAACGCCTCCCACATCCAACTTTTTCAGTTTTACAAGACATAGTTGTTGTTGCCATTGTGGCTTTTGCGTGCTTAAATCCCAACCCTTGCTCTCGTCCAACAATGAAACGTATCTCTCAATGTTTCCTTTGTCAGCTCTCACCATTCAACATTCCTTTACATCATATTTCGTTGCAACAACTCATGAGTCAAGAACTCAGGCAATACTTGAAATTGTGA 1155 0.4087 MQTEYLFQPCSVRDKKPRQNQLVIILSITIFLLMAFFLLLYLRHNSIAIKSKHARITETSKNGDLFCIWNYNGSIAYEDIITATEDFNLKYCIGTGAYGSVYRAQLPSGRIVAVKKLHGFEAEVPSFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMERGSLFSVLFDDMEAMELDWKKRVNIVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSMWEPTVSDFGTARFLNLDSSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEILSSLQSISTDDGIKLCEILDQRLPHPTFSVLQDIVVVAIVAFACLNPNPCSRPTMKRISQCFLCQLSPFNIPLHHISLQQLMSQELRQYLKL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00627 384 FunFam Leucine-rich repeat receptor protein kinase MSP1 49 165 - -
Viun5g00627 384 SUPERFAMILY Protein kinase-like (PK-like) 66 352 IPR011009 -
Viun5g00627 384 FunFam MDIS1-interacting receptor like kinase 2 166 360 - -
Viun5g00627 384 PANTHER LEUCINE RICH REPEAT KINASE 2 8 355 - -
Viun5g00627 384 Gene3D Transferase(Phosphotransferase) domain 1 166 359 - -
Viun5g00627 384 Gene3D Phosphorylase Kinase; domain 1 47 165 - -
Viun5g00627 384 Pfam Protein kinase domain 90 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00627 384 ProSitePatterns Tyrosine protein kinases specific active-site signature. 211 223 IPR008266 GO:0004672|GO:0006468
Viun5g00627 384 ProSiteProfiles Protein kinase domain profile. 87 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00627 384 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00627 Viun-Chr5 3828270 3831667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00627 1 259 Receptor kinase-like Gene Family AT4G08850 46.038 1.09e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00627 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00627 - - vum:124822324 663.685