Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00626 ATGATGCAGTTTTTGGTTTCCAATTGCCATCTTGTGATGTATGTTTTGTTTTGTATAGTCTCTGTTTTGGAGTTGGGATGCGCGTCTACACCATCGCAGCTTCAATTGGAAGCAAACGCTCTAATTAATAGTGGATGGTGGTGGGATTTGCCGCAAGATATATGTTCATTCACCGATATAAGTTGCAATGATGGTGGAAGTGTAACTCATATCACATATCCGTATTCCGAGAAACCCATTCAATTAGCAAATCTAAACCTTTTTGCTTTTAAGAATTTGGAACGTCTTGAGGTTTCCTTCTGTGGTCTAGAAGGGATTATTCCATCTGAAATTGGTAGTCTTTCCAAACTTACCTATCTTGATTTATCTCACACTTTTATTCATGGAGAGATACCTTTTACGATAGGAAATCTTCTCAATCTCAATTATCTCGATTTGTCCTACGATTCTATTCATGGTCAGATACCTCCTTCAATGGGAAATCTAATCAAACTATCCACCCTAATACTCTCCAACAACTTCATTGAAGGTCCTATTTCTTTTGAATTCTCATTCTTTAAGAATCTTACTATCATTGATCTATCTTACAACAAAATCACTGGAACCTTGCCAATTTCACTTTCAAAACTCAGGAACCTTCAAAATCTTCACATTTCGCACAATCTACTCACCGGTTCTCTAAAACCTTTCTCAGATGGATTTTTTCCATTTTTGGAAAGTCTGGATCTAAGCTACAATAGTCTTACCGGAGCGATTCCTCTGTCCCTACATAATGTCCACTACCTGGACCTTTCCTTCAACCGTTTGAAGGGTCCCATTCCAAACGGTGTACATCCATATGCGCTAATGGGGAACAAGGGTGTGTGCAGCAACTTTACAAATGTACAAAAGGAATACCATTTCCGGTCTTGTTCAGTCAGCCAGAAGAAACGAAGGCAGCTGGTCATAATTCTTTCTATCACCATATTTCTAATCATGGTTTTCTTACTACTTCTATATCTGAAGCGCAATCGCATTGCAATCAAGAACAAACAAGCAAGAATAACCGAAATATCCAAGAATGGGGACTTGTTTTGCATATGGAACTATGACGGAAGCATAGCCTATGAAGACATCATTACTGCAACCGAAGACTTTGACCTCAAATATTGTATCGGAAAAGGTGCTTACGGGAGTGTTTATAGGGCTCAACTACCAAGCGGCAAGATTGTTGCGGTGAAAAAACTCCTTGACTTTGAAGCAGAGGTCCACACATTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCAAAAATAAAGCACCGACATATAGTGAAGCTCCATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATTTATGAGTACATGGAGAACGGAAGCTTGTTTTCTGTGTTACTTAATGACATGGAAGCAATGGAATTGGATTGGAAAAAGAGGATTAACGTAGTGAAAGGTACTGCACATGCTCTTTCATATCTTCATCATGATTGTGTCCCTCCTATAGTCCATAGAGACGTATCAACCAGTAACGTGTTGCTTAACTCCAAATGGGAGCCCACTGTTTCCGACTTTGGCACTGCTCGATTTCTCAACCTCGATTCATCCAATCGAACTATTGTTGCAGGAACCATTGGATACATAGCACCTGAGCTTGCGTATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCACTTGAAACTTTGATGGGAAAACATCCGAAGGAAATACTCTCATCACTTCATTCAACTTCTGCCGGTGGTGACATCAAATTATGTGAAATATTAGACCAACGGCTCTTGCACCCAACATTTTCAGTTTTACAAGACATAGTTGTTGTTGCCATTATGGCTTTTGCGTGCTTAAATCCCAATCCTTTCTCTCGTCCAACAATGAAACGCATCTCTCAATGTTTTCTTAGTCAGCTCACACCATTCAACATTCCTTTACATCATATTTCACTACACCAGCTCATGAGTCAAAAACTCAGGCACTCCTTGAAATTGTGA 2031 0.3949 MMQFLVSNCHLVMYVLFCIVSVLELGCASTPSQLQLEANALINSGWWWDLPQDICSFTDISCNDGGSVTHITYPYSEKPIQLANLNLFAFKNLERLEVSFCGLEGIIPSEIGSLSKLTYLDLSHTFIHGEIPFTIGNLLNLNYLDLSYDSIHGQIPPSMGNLIKLSTLILSNNFIEGPISFEFSFFKNLTIIDLSYNKITGTLPISLSKLRNLQNLHISHNLLTGSLKPFSDGFFPFLESLDLSYNSLTGAIPLSLHNVHYLDLSFNRLKGPIPNGVHPYALMGNKGVCSNFTNVQKEYHFRSCSVSQKKRRQLVIILSITIFLIMVFLLLLYLKRNRIAIKNKQARITEISKNGDLFCIWNYDGSIAYEDIITATEDFDLKYCIGKGAYGSVYRAQLPSGKIVAVKKLLDFEAEVHTFDESFRNEAKVLSKIKHRHIVKLHGFCLHKRIMFLIYEYMENGSLFSVLLNDMEAMELDWKKRINVVKGTAHALSYLHHDCVPPIVHRDVSTSNVLLNSKWEPTVSDFGTARFLNLDSSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEILSSLHSTSAGGDIKLCEILDQRLLHPTFSVLQDIVVVAIMAFACLNPNPFSRPTMKRISQCFLSQLTPFNIPLHHISLHQLMSQKLRHSLKL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00626 676 SUPERFAMILY L domain-like 40 276 - -
Viun5g00626 676 FunFam Nuclear pore complex protein NUP107 30 180 - -
Viun5g00626 676 Pfam Protein kinase domain 384 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00626 676 ProSitePatterns Tyrosine protein kinases specific active-site signature. 503 515 IPR008266 GO:0004672|GO:0006468
Viun5g00626 676 ProSitePatterns Protein kinases ATP-binding region signature. 385 408 IPR017441 GO:0005524
Viun5g00626 676 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Viun5g00626 676 FunFam MDIS1-interacting receptor like kinase 2 458 652 - -
Viun5g00626 676 PRINTS Leucine-rich repeat signature 238 251 - -
Viun5g00626 676 PRINTS Leucine-rich repeat signature 256 269 - -
Viun5g00626 676 Pfam Leucine Rich Repeat 238 258 IPR001611 GO:0005515
Viun5g00626 676 FunFam Leucine-rich repeat receptor protein kinase MSP1 341 457 - -
Viun5g00626 676 SUPERFAMILY Protein kinase-like (PK-like) 362 644 IPR011009 -
Viun5g00626 676 ProSiteProfiles Protein kinase domain profile. 379 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g00626 676 Gene3D Phosphorylase Kinase; domain 1 339 457 - -
Viun5g00626 676 PANTHER LEUCINE RICH REPEAT KINASE 2 86 649 - -
Viun5g00626 676 Gene3D Ribonuclease Inhibitor 180 298 IPR032675 -
Viun5g00626 676 Gene3D Ribonuclease Inhibitor 32 179 IPR032675 -
Viun5g00626 676 Gene3D Transferase(Phosphotransferase) domain 1 458 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00626 Viun-Chr5 3809735 3812157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00626 103 551 Receptor kinase-like Gene Family AT4G08850 41.542 1.02e-100 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g00626 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00626 - - var:108327175 1087.4