Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00612 ATGGCAGGAAGTTCATGCAAGGTTGCAATTGTCCTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGGTGGCATTGGTACGATGGACGAATTTCTCAAAGAACGAGCTATGGAGGCCCATGAAATCGCTCTGAAATCCTACGTGCCTGACCCTACAAACGTCACTTCCCAGCACAATAACTTGCATGTTAAGGAGACTACTAGGAAGAAGCCAAAGAAGGAATCAAACAGCACAACAACAACAAGGAGGGAGATGACGGAGGAGAAGGATAAGAAGAAATACAAAGGACCATGCTTGGCCCTCAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAAGCTGGGCCAAAAACCGTTTTAAGTTAGCCAGTTGCGTCAAGGGTTTTGGAAGAAGGGCCACCGGAGGATCCAAGGGCAAAATCTACACTGTCTCTGATCCCTCTGACGATGATCCCGTTGACCCTAAAGAAGGAACCCTACGCTACGGTGTTTTACAAAAGGACCCACTCTGGATCATATTTTCAAAAAGCATGATAATCAAGCTCAACTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGCCACACCGTGGTCATCAAGGGTGGTGCAGGTCTTACCATGCAGTTCGTGAACAACATTATCATCCATGGGCTTAAAATACACCACATCAAGTCGACGCCGGGTGGCATGATCAGAGACTCTTGGGACCATGTCGGAACAAGAACAAGGGCTGATGGTGATGCCATCTCCATTTTCGGCTCTTCAAACATTTGGATCGATCACATCTCACTCTCTGAATGCGAGGATGGTCTCGTCGATATTATCCAGGGTTCCACTGCAATCACCGTCTCAAATTGCCACATGACCAAACACAACGATGTGATGTTGTTCGGAGCGAGCGACACCTTCTCCGGAGACAAGATAATGCAGGTGACGGTGGCATTCAACCATTTCGGGCAGGGTCTGATCCAGAGAATGCCCCGATGCAGATGGGGTTTCTTCCATGTGTTGAACAACGATTACACTCACTGGATAATGTATGCCATTGGTGGGAGCTCAGGGCCAACCATTCTGAGCCAAGGAAACCGGTTCATTGCACCGGACGACGACAAGGCGAAGGAAGTGACGCACAGGGACTATGCAGAACCTCCCGTGTGGGGGAAATGGCAATGGAGATCAGAGAACGATGTGTTCATGAATGGGGCTAAATTTATTCAGTCAGGGAAACCTCTCGGGAAGCTTCCATTCAACAAAGGGTATCTCATGAAACCTAGACATGGCTCTCAAGCCAACAGGCTCACACGCTTTGCTGGAACCCTCAAATGCAAAGTGGGAAACCCTTGCTAG 1359 0.4864 MAGSSCKVAIVLVAFAITIPCLEGGIGTMDEFLKERAMEAHEIALKSYVPDPTNVTSQHNNLHVKETTRKKPKKESNSTTTTRREMTEEKDKKKYKGPCLALNPIDRCWRCKKSWAKNRFKLASCVKGFGRRATGGSKGKIYTVSDPSDDDPVDPKEGTLRYGVLQKDPLWIIFSKSMIIKLNYELLISSDKTIDGRGHTVVIKGGAGLTMQFVNNIIIHGLKIHHIKSTPGGMIRDSWDHVGTRTRADGDAISIFGSSNIWIDHISLSECEDGLVDIIQGSTAITVSNCHMTKHNDVMLFGASDTFSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDDDKAKEVTHRDYAEPPVWGKWQWRSENDVFMNGAKFIQSGKPLGKLPFNKGYLMKPRHGSQANRLTRFAGTLKCKVGNPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00612 452 Pfam Pectate lyase 188 368 IPR002022 -
Viun5g00612 452 Gene3D - 102 445 IPR012334 -
Viun5g00612 452 PANTHER PECTATE LYASE 18-RELATED 42 450 IPR045032 GO:0030570
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Viun5g00612 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Viun5g00612 452 SMART amb_all 177 374 IPR002022 -
Viun5g00612 452 Pfam Pectate lyase, N terminus 26 85 IPR007524 GO:0030570
Viun5g00612 452 MobiDBLite consensus disorder prediction 63 90 - -
Viun5g00612 452 SUPERFAMILY Pectin lyase-like 103 443 IPR011050 -
Viun5g00612 452 MobiDBLite consensus disorder prediction 54 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00612 Viun-Chr5 3706697 3708640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00612 15 452 Polysaccharide Lyase AT5G15110 54.803 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00612 K01728 - gmx:100780236 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00612 5 3706697 3708640 Viun5g00612 5 3706697 3708640 ECH