Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00611 ATGGAAATGATGAAAGATAACATTATAGGGAAGAACCAAATGTCCATGGCAGAAGGTGAGCTTCAAGCTACACGGTGTGTCAAGAGGCGAAGAAGAGAGGTTGCTGCAGCAGTTAGCAGTGGTGATGATAACAATCACCAGCAGTTACCAAAACAACATGGTGGTGAAAATTCTACAATCAACACTACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGGTGGACTGGTCGGTATGAAGCTCACTTGTGGGACAAACTCTCATGGAACATAACACAGAAGAAAAAAGGGAAGCAAGTTTACCTTGGGGCTTATGATGAAGAAGAATCGGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTTCACCAATTTTCCAATATCTGATTACGGGAAAGATATGGAAATAATGCAGACTATGACCAAGGAGGAGTATTTGGCAACTTTAAGGAGAAAGAGCAGTGGATTTTCAAGAGGTGTGTCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTACCTTGGTACCTACGGCACCCAAGAGGAAGCTGCACGAGCTTATGACTTAGCGGCCATTGAGTACAGAGGAATCAATGCTGTGACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCAGGAGGAGGAAGCACCCCAGAAGCAAAACTTGAAGCACATGCAGTACTAGAGGGTCAAAAGGTGGCATCCCCATCTAATTATTCTCTGACAGAAGAATCAAAATCTTCAGTCATTCACAACAGTTTTTTCAGCCTAGATTCTCTGAATTCCCCAGTAGGGCAAGAAAATTATGGAAGCAAACCCTACCCATTCTCAAGCAGCAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTGTTTAGAGAATTGGTCAAAAAGAATTCAAGTGTATCTGGAGATGAAGCTGATGATGGGGAAGTCACAAAAGGTGAACAGCCACAGATAGGTAGTGATGATGATCTGGGTGGAATCTTCTTTGATAGCATTGGTGATATCCCATTTGTCTGTGATCCCAATAGATACAACTTAGAATTGCAAGAAAGAGACCTCCACTCAATATTTTGA 1170 0.4231 MEMMKDNIIGKNQMSMAEGELQATRCVKRRRREVAAAVSSGDDNNHQQLPKQHGGENSTINTTKRSSKFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYGKDMEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDLAAIEYRGINAVTNFDLSTYIKWLKPGGGSTPEAKLEAHAVLEGQKVASPSNYSLTEESKSSVIHNSFFSLDSLNSPVGQENYGSKPYPFSSSKSSSPTALGLLLRSSLFRELVKKNSSVSGDEADDGEVTKGEQPQIGSDDDLGGIFFDSIGDIPFVCDPNRYNLELQERDLHSIF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00611 389 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Viun5g00611 389 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 294 - -
Viun5g00611 389 CDD AP2 67 136 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 MobiDBLite consensus disorder prediction 40 67 - -
Viun5g00611 389 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Viun5g00611 389 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700|GO:0006355
Viun5g00611 389 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Viun5g00611 389 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 Pfam AP2 domain 67 126 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Viun5g00611 389 MobiDBLite consensus disorder prediction 331 353 - -
Viun5g00611 389 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Viun5g00611 389 MobiDBLite consensus disorder prediction 34 71 - -
Viun5g00611 389 SUPERFAMILY DNA-binding domain 67 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00611 Viun-Chr5 3701267 3703637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00611 64 271 AP2-EREBP Transcription Factor Family AT5G57390 59.624 2.58e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun5g00611 AP2 8.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00611 - - gmx:100779867 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00611 5 3701267 3703637 Viun5g00611 5 3701267 3703637 ECH