Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00605 ATGTCTAGCCCTAGTAGTCCAGAGATAGAAGAGAAGAGAGTTACACAGGAAGATAAAGTCAAATCTGCTAAAACTGAAATGGGTGAGGTGAGGGAAGAGAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTCCAAACAAGGGTGTGCTTGATTCATCTACTTCCCATGATGATCAAAGCGAAGAGCCTGAGTTTGTCTCACTTAGCCTTGGAAGGAGTCCAACGGAGCCTAAGAAGGAGGCAAGAATCGGAGACTTTAACAAACCGACAGAAGAAAACGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACTTGTTGGAGATGGAGGTTGTGTCAGATTTGAGTCCGATGAACAGCTCAGAAGAACCAAAGGAAACGGTGACAGAGGGAACTTTGTCAACAAATCAATCAGCAAAAGTGATAAATGTGAATACCGACATTTCAGATCAAATGCCAGCCAAGAGAGCAAGGGTGTCTGTGAGAGCTAGATGTGAGACTCCCACGATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCATGCCCGAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTTAGGAAGCAGGTGCAAAGGTGTTCCCAGGACCTGTCCATCTTAATCACAACCTATGAAGGAACCCATAACCACCCACTTCCGGTCTCAGCCACAGCCATGGCTTCAACAACTTCTGCTGCAGCTTCCATGCTATTGTCAGGTTCTTCAACATCTTCAAGCCACATCTCTGCATCTTTTGGAAATGGTCTAAGTTTCAGTGACCAGTTTAATGAATCAAGACCCAAACAAATGTTCTCACCACCAAGCCATGCCTCACCACATATGTTCTCAACAATCACTCTAGACCTTACTTCTTCAGCTCCTTCCTCCTCATCAACTCAATTCCACCGTGGCTTAACTTCAACCGTGGCTCCAATTTCAAACCCAAGATCCTCACCCAGTCTCAGCTTTTGTTCACCGGAGCATAACTTCATACCATCCATTTGGGGTAAGGGGTTCCATGATAATGCCACAACCACGACACCAATTGACAAAATCCCCACAAGGCCAATTATGCAGCCAAATAATTTCCAACAACATTTCTACCAACAATGTACAACAAACCAACAAACTCCCTCCCGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTTTTCGTTCAGTCATAGCTGCTGCGGTTTCATCGATAGTGGAATCAAACAGTGGTAAACAAGAGGTAACAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAGCATCTTCAACTGGCTTCACCTAGTCCCTTAACTGGCTACTTCAAAAGTTTGGCCTCTAAAAGTTCCGAGGCTGGAAACTTCATTCTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAATGTCACAAATCAGATCAACCGCTACGTTCCAGAAATGAACACGCATCACTAG 1566 0.4464 MSSPSSPEIEEKRVTQEDKVKSAKTEMGEVREENERLKKTLERVEKDYHSLQLRFFDILHKDVPNKGVLDSSTSHDDQSEEPEFVSLSLGRSPTEPKKEARIGDFNKPTEENVGPNLTLGLDSKHLLEMEVVSDLSPMNSSEEPKETVTEGTLSTNQSAKVINVNTDISDQMPAKRARVSVRARCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSQDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSSSHISASFGNGLSFSDQFNESRPKQMFSPPSHASPHMFSTITLDLTSSAPSSSSTQFHRGLTSTVAPISNPRSSPSLSFCSPEHNFIPSIWGKGFHDNATTTTPIDKIPTRPIMQPNNFQQHFYQQCTTNQQTPSREALAETITKAISTDPSFRSVIAAAVSSIVESNSGKQEVTENVLGSGLNLKLGEHLQLASPSPLTGYFKSLASKSSEAGNFILLQPPLPFSFSKNVTNQINRYVPEMNTHH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00605 521 MobiDBLite consensus disorder prediction 134 153 - -
Viun5g00605 521 MobiDBLite consensus disorder prediction 69 117 - -
Viun5g00605 521 Coils Coil 13 54 - -
Viun5g00605 521 Gene3D WRKY domain 175 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00605 521 MobiDBLite consensus disorder prediction 1 36 - -
Viun5g00605 521 FunFam probable WRKY transcription factor 31 175 252 - -
Viun5g00605 521 Pfam WRKY DNA -binding domain 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00605 521 ProSiteProfiles WRKY domain profile. 185 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00605 521 SMART WRKY_cls 190 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00605 521 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 447 IPR044810 GO:0003700
Viun5g00605 521 MobiDBLite consensus disorder prediction 10 36 - -
Viun5g00605 521 SUPERFAMILY WRKY DNA-binding domain 183 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00605 Viun-Chr5 3664654 3667427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00605 27 449 WRKY Transcription Factor Family AT5G15130 45.275 1.14e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g00605 WRKY 6.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00605 - - gmx:100780402 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00605 5 3664654 3667427 Viun5g00605 5 3664654 3667427 ECH
Viun5g00605 5 3664654 3667427 Viun3g04552 3 53176714 53180921 ECH