Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00604 ATGTCTAGCCCTAGTAGTCCAGAGATAGAAGAGAAGAGAGTTACACAGGAAGATAAAGTCAAATCTGCTAAAACTGAAATGGGTGAGGTGAGGGAAGAGAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTCCAAACAAGGGTGTGCTTGATTCATCTACTTCCCATGATGATCAAAGCGAAGAGCCTGAGTTTGTCTCACTTAGCCTTGGAAGGAGTCCAACGGAGCCTAAGAAGGAGGCAAGAATCGGAGACTTTAACAAACCGACAGAAGAAAACGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACTTGTTGGAGATGGAGGTTGTGTCAGATTTGAGTCCGATGAACAGCTCAGAAGAACCAAAGGAAACGGTGACAGAGGGAACTTTGTCAACAAATCAATCAGCAAAAGTGATAAATGTGAATACCGACATTTCAGATCAAATGCCAGCCAAGAGAGCAAGGGTGTCTGTGAGAGCTAGATGTGAGACTCCCACGATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCATGCCCGAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTGCAAAGGTGTTCCCAGGACCTGTCCATCTTAATCACAACCTATGAAGGAACCCATAACCACCCACTTCCGGTCTCAGCCACAGCCATGGCTTCAACAACTTCTGCTGCAGCTTCCATGCTATTGTCAGGTTCTTCAACATCTTCAAGCCACATCTCTGCATCTTTTGGAAATGGTCTAAGTTTCAGTGACCAGTTTAATGAATCAAGACCCAAACAAATGTTCTCACCACCAAGCCATGCCTCACCACATATGTTCTCAACAATCACTCTAGACCTTACTTCTTCAGCTCCTTCCTCCTCATCAACTCAATTCCACCGTGGCTTAACTTCAACCGTGGCTCCAATTTCAAACCCAAGATCCTCACCCAGTCTCAGCTTTTGTTCACCGGAGCATAACTTCATACCATCCATTTGGGGTAAGGGGTTCCATGATAATGCCACAACCACGACACCAATTGACAAAATCCCCACAAGGCCAATTATGCAGCCAAATAATTTCCAACAACATTTCTACCAACAATGTACAACAAACCAACAAACTCCCTCCCGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTTTTCGTTCAGTCATAGCTGCTGCGGTTTCATCGATAGTGGAATCAAACAGTGGTAAACAAGAGGTAACAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAGCATCTTCAACTGGCTTCACCTAGTCCCTTAACTGGCTACTTCAAAAGTTTGGCCTCTAAAAGTTCCGAGGCTGGAAACTTCATTCTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAATGTCACAAATCAGATCAACCGCTACGTTCCAGAAATGAACACGCATCACTAG 1554 0.4459 MSSPSSPEIEEKRVTQEDKVKSAKTEMGEVREENERLKKTLERVEKDYHSLQLRFFDILHKDVPNKGVLDSSTSHDDQSEEPEFVSLSLGRSPTEPKKEARIGDFNKPTEENVGPNLTLGLDSKHLLEMEVVSDLSPMNSSEEPKETVTEGTLSTNQSAKVINVNTDISDQMPAKRARVSVRARCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVQRCSQDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSSSHISASFGNGLSFSDQFNESRPKQMFSPPSHASPHMFSTITLDLTSSAPSSSSTQFHRGLTSTVAPISNPRSSPSLSFCSPEHNFIPSIWGKGFHDNATTTTPIDKIPTRPIMQPNNFQQHFYQQCTTNQQTPSREALAETITKAISTDPSFRSVIAAAVSSIVESNSGKQEVTENVLGSGLNLKLGEHLQLASPSPLTGYFKSLASKSSEAGNFILLQPPLPFSFSKNVTNQINRYVPEMNTHH 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00604 517 MobiDBLite consensus disorder prediction 134 153 - -
Viun5g00604 517 SMART WRKY_cls 190 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00604 517 MobiDBLite consensus disorder prediction 69 117 - -
Viun5g00604 517 Coils Coil 13 54 - -
Viun5g00604 517 MobiDBLite consensus disorder prediction 1 36 - -
Viun5g00604 517 SUPERFAMILY WRKY DNA-binding domain 183 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00604 517 Pfam WRKY DNA -binding domain 191 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00604 517 ProSiteProfiles WRKY domain profile. 185 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g00604 517 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 443 IPR044810 GO:0003700
Viun5g00604 517 Gene3D WRKY domain 175 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g00604 517 MobiDBLite consensus disorder prediction 10 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00604 Viun-Chr5 3664654 3667427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00604 27 445 WRKY Transcription Factor Family AT5G15130 44.396 2.35e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g00604 WRKY 3.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00604 - - gmx:100780402 719.539