Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00594 ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACTCACGAACAAGATCACCACCACCTCCCTTCAACCTCTCTCAACTCCTTCCCCTTACCACCCCAACACTTTCAAGGGGTTGCACCACCATTGATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGATGAGGTGAATGGAGATGATGAGTTATCCGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTAGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAACCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATACGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGTTGATAATGATGTTCTTAAGAGTCAGAATCAGAAACTACAGGCAGAGTTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAAATGGAATAATGAGACTTAAGAAAGAAGGTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTAATTTAGAACTCTCAAGAGCACCAGTTTTGAACAACCCTACATCTTGTCAAGCACCCTTTCCCACCAGCATCACTCAGATCCTTCAATATTCGTCAAAACCAGATTTTCATGATGATGACTTCTGCAACGTGATTCACAACATTGATGCACACCAAAACTTTTGGCCCTGGCCTGGTCAACAGAACCACCATTTCCATTGA 804 0.4453 MAFPPSHSFTFHTHEQDHHHLPSTSLNSFPLPPQHFQGVAPPLMLKRSMSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKVDNDVLKSQNQKLQAELQAVKSRGWCENGIMRLKKEGEGSWSNGSDNSSDINLELSRAPVLNNPTSCQAPFPTSITQILQYSSKPDFHDDDFCNVIHNIDAHQNFWPWPGQQNHHFH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00594 267 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Viun5g00594 267 SMART HOX_1 76 137 IPR001356 GO:0003677
Viun5g00594 267 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Viun5g00594 267 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Viun5g00594 267 Gene3D - 73 141 - -
Viun5g00594 267 Coils Coil 125 173 - -
Viun5g00594 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 212 IPR045224 GO:0003700
Viun5g00594 267 FunFam Homeobox-leucine zipper protein ATHB-13 69 137 - -
Viun5g00594 267 CDD homeodomain 78 134 IPR001356 GO:0003677
Viun5g00594 267 MobiDBLite consensus disorder prediction 1 33 - -
Viun5g00594 267 SUPERFAMILY Homeodomain-like 72 135 IPR009057 -
Viun5g00594 267 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Viun5g00594 267 Pfam Homeobox associated leucine zipper 133 172 IPR003106 GO:0006355|GO:0043565
Viun5g00594 267 Pfam Homeodomain 78 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00594 Viun-Chr5 3611442 3613663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00594 1 259 Homeobox Transcription Factor Family AT5G15150 48.958 1.50e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun5g00594 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00594 K09338 - gmx:100797920 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00594 5 3611442 3613663 Viun5g00594 5 3611442 3613663 ECH
Viun4g00669 4 4552992 4556009 Viun5g00594 5 3611442 3613663 PCT