Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00588 ATGTCTAGCCGAAGATCCAGACAACATTCGGGGTCTACAAGGATCTCCGATGACCAAATCATCGACCTCGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCGAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCTGATAGCGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4695 MSSRRSRQHSGSTRISDDQIIDLVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00588 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Viun5g00588 92 Gene3D - 2 83 IPR036638 GO:0046983
Viun5g00588 92 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Viun5g00588 92 Coils Coil 55 75 - -
Viun5g00588 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 77 IPR036638 GO:0046983
Viun5g00588 92 CDD bHLH_AtPRE_like 10 75 - -
Viun5g00588 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Viun5g00588 92 FunFam Transcription factor ILI6 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00588 Viun-Chr5 3566784 3568944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00588 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 5.24e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g00588 HLH 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00588 - - gmx:100796852 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00588 5 3566784 3568944 Viun5g00588 5 3566784 3568944 ECH
Viun4g00671 4 4619397 4621605 Viun5g00588 5 3566784 3568944 PCT