Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00583 ATGGACATAACCCCAACAACAACGATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCAACAAAAGCCTTGTCTTTCTCCAACGGGGTCCTCAAGCGCCACCATCACCACCACCACCACCCCGTACCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACCTGGGTGGCCACGCCTTAGATGGCTGTGGCGAGTTCATGCCATCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAACCGGATGAGCCGCCTATCGCATCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCTCCGCCTCCGTTCCAGTCAGCAGCGGCGGCGAATCGAAGCCCGAATTCAGCATCCCCGCCCCCGATCTCCTCCTCTTACTACCCCTCCGCCCCGCACATGCTCCTCGCCCTCTCCGCCGGTCTCGCCGCTCCGCCGGAGAGCACTGCGGCACCCTCCACCGCACTCACCAGAAAGCGTTTCAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTTGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGGTTGGCGTTGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATGTTAATATTACTAGCAATGATGATCTTACTAATAATATTAATGATAATGATGCAAATGGGGGTGCCAAGGGTTTTGAAGACCACAATACCAACATCGGTGGTGGTGGTGCTGAAGATCGCGCGGAGGATCCGAGTCGCAATCACTTTGGTGGGGTGAACGTTGGTGCTAACGGGTCTTCTTCTACTTCTTGA 969 0.5511 MDITPTTTINNTTPSATTKSPEHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHPVPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQSAAAANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTLAKKDNVNITSNDDLTNNINDNDANGGAKGFEDHNTNIGGGGAEDRAEDPSRNHFGGVNVGANGSSSTS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00583 322 FunFam Zinc-finger homeodomain protein 2 183 256 - -
Viun5g00583 322 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Viun5g00583 322 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 254 - -
Viun5g00583 322 Gene3D - 183 257 - -
Viun5g00583 322 MobiDBLite consensus disorder prediction 1 36 - -
Viun5g00583 322 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Viun5g00583 322 MobiDBLite consensus disorder prediction 146 161 - -
Viun5g00583 322 SUPERFAMILY Homeodomain-like 187 256 IPR009057 -
Viun5g00583 322 MobiDBLite consensus disorder prediction 276 322 - -
Viun5g00583 322 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Viun5g00583 322 NCBIfam homeobox domain, ZF-HD class 195 252 IPR006455 -
Viun5g00583 322 MobiDBLite consensus disorder prediction 131 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00583 Viun-Chr5 3489642 3491162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00583 1 251 ZF-HD Transcription Factor Family AT5G15210 53.175 5.88e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun5g00583 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00583 - - gmx:100789447 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00583 5 3489642 3491162 Viun5g00583 5 3489642 3491162 ECH
Viun4g00687 4 4851717 4853289 Viun5g00583 5 3489642 3491162 PCT