Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00581 ATGGAAGGTACCAGCCAAAACACGTTTACCTTCATTACCACCACCATCGACGCTCCAAGTCCAACCACCCCTGAGATATCACCATCTCGTGATGCTCTTTCAGGACTAGCACAAGCTTACCCTCCTGGCTTTTCCAGAAAGGTGTTTGCGGAGGTTATCGGAACGTTTCTGTTGGTGTTCGTGGGAAGTGGTTCTGCGGGTCTTAGTGTTATTGATGAGAGCAGAGTGTCAAAGCTTGCAGCTTCGATTGCTGCAGGACTCATCGTCACAGTGATGATTTACTCAATCGGACACATTTCTGGGGCACACATGAACCCTGCGGTTTCCCTTGCTTTTGCTGCGGTGAGGCATTTTCCGTGGCCACAGGTCCCGTTTTACGTAGCAGCTCAACTCACTGGATCCATTTCTGCTTCATACACACTGCGAGAGCTTTTCCAGCCATCAAAGGAAATTGGGGGAACAACACCTGCTGGATCACATGTTCAAGCACTCATCGTGGAAATGGTGACAACTTTCACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAACTATCAGGAGTAGCAGTAGGTTGTTCGGTTTCCATATCAAGCATTGTTGCCGGACCAATATCGGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACATCATCGTACAAGGGACTTTGGGTATATTTTGTTGGACCAATTACTGGTGCAGTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTCTCATTCAAGGTACGCCAAAGCGTTAGTGGAACTAAAACCGACCAACGAAGCTTGGTTTGA 867 0.4821 MEGTSQNTFTFITTTIDAPSPTTPEISPSRDALSGLAQAYPPGFSRKVFAEVIGTFLLVFVGSGSAGLSVIDESRVSKLAASIAAGLIVTVMIYSIGHISGAHMNPAVSLAFAAVRHFPWPQVPFYVAAQLTGSISASYTLRELFQPSKEIGGTTPAGSHVQALIVEMVTTFTMVFISMAVATDTNATGQLSGVAVGCSVSISSIVAGPISGGSMNPARTLGPAIATSSYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKVRQSVSGTKTDQRSLV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00581 288 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Viun5g00581 288 PANTHER AQUAPORIN NIP2-1 38 259 IPR034294 -
Viun5g00581 288 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 Gene3D Glycerol uptake facilitator protein. 25 260 IPR023271 -
Viun5g00581 288 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 NCBIfam MIP family channel protein 50 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g00581 288 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00581 Viun-Chr5 3449739 3453450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00581 45 283 Major Intrinsic Protein MIP AT5G37820 47.303 3.29e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00581 K09874 - gmx:100788071 446.047